miRNA display CGI


Results 1 - 20 of 51 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11101 3' -57.8 NC_002794.1 + 129429 0.66 0.903512
Target:  5'- gGACGGGCGGAgcgaGUCUgaaccGGAGUg- -3'
miRNA:   3'- aCUGCCUGCCUagg-CAGGa----CCUCGug -5'
11101 3' -57.8 NC_002794.1 + 138098 0.66 0.903512
Target:  5'- -aGCGG-CGGA-CCGUCUgcaGGAGgGCg -3'
miRNA:   3'- acUGCCuGCCUaGGCAGGa--CCUCgUG- -5'
11101 3' -57.8 NC_002794.1 + 114501 0.66 0.903512
Target:  5'- -cGCGcGcCGGA-CCGUCCcGGAGCGa -3'
miRNA:   3'- acUGC-CuGCCUaGGCAGGaCCUCGUg -5'
11101 3' -57.8 NC_002794.1 + 58386 0.66 0.903512
Target:  5'- aGGCGcGCGGGcgCCagcUgCUGGAGCACg -3'
miRNA:   3'- aCUGCcUGCCUa-GGc--AgGACCUCGUG- -5'
11101 3' -57.8 NC_002794.1 + 37754 0.66 0.903512
Target:  5'- cGGCGcGGCGGcgCCGgcg-GGAGCGg -3'
miRNA:   3'- aCUGC-CUGCCuaGGCaggaCCUCGUg -5'
11101 3' -57.8 NC_002794.1 + 105807 0.66 0.902903
Target:  5'- aGACGGAccgaaagcgcgacCGGGUCgGUCgaGcGAGCGg -3'
miRNA:   3'- aCUGCCU-------------GCCUAGgCAGgaC-CUCGUg -5'
11101 3' -57.8 NC_002794.1 + 108139 0.66 0.897323
Target:  5'- cGcCGGcUGGAUUCG-CCgccgGGAGCGCc -3'
miRNA:   3'- aCuGCCuGCCUAGGCaGGa---CCUCGUG- -5'
11101 3' -57.8 NC_002794.1 + 141429 0.66 0.897323
Target:  5'- gGGCGG-CGGGggCG-CCgGGGGCGCc -3'
miRNA:   3'- aCUGCCuGCCUagGCaGGaCCUCGUG- -5'
11101 3' -57.8 NC_002794.1 + 137619 0.66 0.893504
Target:  5'- cGGCGG-CGGugcccacgacgaCGUCCUGGcgGGCGCc -3'
miRNA:   3'- aCUGCCuGCCuag---------GCAGGACC--UCGUG- -5'
11101 3' -57.8 NC_002794.1 + 5009 0.66 0.890916
Target:  5'- cGACGGAcuCGGAcUCgCGUCC-GGGGUg- -3'
miRNA:   3'- aCUGCCU--GCCU-AG-GCAGGaCCUCGug -5'
11101 3' -57.8 NC_002794.1 + 148371 0.66 0.890916
Target:  5'- cGAuCGGcaGCGGggCCa-UCUGGAGCGCg -3'
miRNA:   3'- aCU-GCC--UGCCuaGGcaGGACCUCGUG- -5'
11101 3' -57.8 NC_002794.1 + 91226 0.66 0.890916
Target:  5'- cGGCGGACGGcgcggcggCCGUCg-GGcuGCGCu -3'
miRNA:   3'- aCUGCCUGCCua------GGCAGgaCCu-CGUG- -5'
11101 3' -57.8 NC_002794.1 + 95860 0.66 0.886969
Target:  5'- cGGCGGGCGGG-CCGUUUcagugUGGcgacccggcggcgagGGCGCa -3'
miRNA:   3'- aCUGCCUGCCUaGGCAGG-----ACC---------------UCGUG- -5'
11101 3' -57.8 NC_002794.1 + 83944 0.66 0.877466
Target:  5'- aGACcgccuGGACcgccuGGG-CCG-CCUGGAGCGCc -3'
miRNA:   3'- aCUG-----CCUG-----CCUaGGCaGGACCUCGUG- -5'
11101 3' -57.8 NC_002794.1 + 62502 0.66 0.877466
Target:  5'- cGGCGGGCGGcgCCG-CC---GGCGCc -3'
miRNA:   3'- aCUGCCUGCCuaGGCaGGaccUCGUG- -5'
11101 3' -57.8 NC_002794.1 + 140188 0.66 0.870432
Target:  5'- cGGC-GACGGcgUCGUCgaGGGGCGa -3'
miRNA:   3'- aCUGcCUGCCuaGGCAGgaCCUCGUg -5'
11101 3' -57.8 NC_002794.1 + 78010 0.66 0.870432
Target:  5'- cGGCGG-CGGcgCCGUCg-GGAGaACg -3'
miRNA:   3'- aCUGCCuGCCuaGGCAGgaCCUCgUG- -5'
11101 3' -57.8 NC_002794.1 + 118968 0.66 0.869717
Target:  5'- gUGACGGucaggugGCGGAgcaCGUCC-GG-GCGCg -3'
miRNA:   3'- -ACUGCC-------UGCCUag-GCAGGaCCuCGUG- -5'
11101 3' -57.8 NC_002794.1 + 121943 0.67 0.855765
Target:  5'- cGACGcGCuGAUCgagCG-CCUGGAGCGCu -3'
miRNA:   3'- aCUGCcUGcCUAG---GCaGGACCUCGUG- -5'
11101 3' -57.8 NC_002794.1 + 105128 0.67 0.855765
Target:  5'- aGACGGucaGGAUgCgGUCgC-GGAGCACg -3'
miRNA:   3'- aCUGCCug-CCUA-GgCAG-GaCCUCGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.