miRNA display CGI


Results 21 - 40 of 51 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11101 3' -57.8 NC_002794.1 + 19502 0.68 0.798789
Target:  5'- cGACGG-CGGAggucgcgCCG-CUcGGAGCGCc -3'
miRNA:   3'- aCUGCCuGCCUa------GGCaGGaCCUCGUG- -5'
11101 3' -57.8 NC_002794.1 + 128539 0.68 0.807412
Target:  5'- gGACGGuCGGGUgcgCCGUCCUgcuGGucaucGCGCu -3'
miRNA:   3'- aCUGCCuGCCUA---GGCAGGA---CCu----CGUG- -5'
11101 3' -57.8 NC_002794.1 + 110274 0.68 0.807412
Target:  5'- cGACGG-CGGccgCCGUCCUcGGGCcCg -3'
miRNA:   3'- aCUGCCuGCCua-GGCAGGAcCUCGuG- -5'
11101 3' -57.8 NC_002794.1 + 129080 0.68 0.807412
Target:  5'- cUGGCGG-CGGA-CCGUCCggugGGuGgACu -3'
miRNA:   3'- -ACUGCCuGCCUaGGCAGGa---CCuCgUG- -5'
11101 3' -57.8 NC_002794.1 + 150809 0.68 0.807412
Target:  5'- cGGCGGACGGccgagCCG--CUGGAGCu- -3'
miRNA:   3'- aCUGCCUGCCua---GGCagGACCUCGug -5'
11101 3' -57.8 NC_002794.1 + 180082 0.68 0.819232
Target:  5'- cGGCGGACGGuAucggugcgcagggcuUCCGUCCgcaguuGCACg -3'
miRNA:   3'- aCUGCCUGCC-U---------------AGGCAGGaccu--CGUG- -5'
11101 3' -57.8 NC_002794.1 + 115880 0.67 0.824203
Target:  5'- gGGCGucCGGGg-CGUCCgcGGAGCGCg -3'
miRNA:   3'- aCUGCcuGCCUagGCAGGa-CCUCGUG- -5'
11101 3' -57.8 NC_002794.1 + 87335 0.67 0.845044
Target:  5'- cGGCGGcagguuccccagcaGCGGGUCCGgcggcgagcggcgUUCUGGgcGGCGCg -3'
miRNA:   3'- aCUGCC--------------UGCCUAGGC-------------AGGACC--UCGUG- -5'
11101 3' -57.8 NC_002794.1 + 150449 0.67 0.847372
Target:  5'- gGGCGGguGCGGAUCCcggaaggcucccgGUUCUGGcuCACg -3'
miRNA:   3'- aCUGCC--UGCCUAGG-------------CAGGACCucGUG- -5'
11101 3' -57.8 NC_002794.1 + 105128 0.67 0.855765
Target:  5'- aGACGGucaGGAUgCgGUCgC-GGAGCACg -3'
miRNA:   3'- aCUGCCug-CCUA-GgCAG-GaCCUCGUG- -5'
11101 3' -57.8 NC_002794.1 + 121943 0.67 0.855765
Target:  5'- cGACGcGCuGAUCgagCG-CCUGGAGCGCu -3'
miRNA:   3'- aCUGCcUGcCUAG---GCaGGACCUCGUG- -5'
11101 3' -57.8 NC_002794.1 + 112296 0.67 0.855765
Target:  5'- gGGCGGcccccCGGGUCCGacuucggcgCCgacggcggGGAGCGCg -3'
miRNA:   3'- aCUGCCu----GCCUAGGCa--------GGa-------CCUCGUG- -5'
11101 3' -57.8 NC_002794.1 + 99439 0.67 0.855765
Target:  5'- uUGuuGGAcCGGAUCCG-CCgccgGGGGUAUc -3'
miRNA:   3'- -ACugCCU-GCCUAGGCaGGa---CCUCGUG- -5'
11101 3' -57.8 NC_002794.1 + 118968 0.66 0.869717
Target:  5'- gUGACGGucaggugGCGGAgcaCGUCC-GG-GCGCg -3'
miRNA:   3'- -ACUGCC-------UGCCUag-GCAGGaCCuCGUG- -5'
11101 3' -57.8 NC_002794.1 + 78010 0.66 0.870432
Target:  5'- cGGCGG-CGGcgCCGUCg-GGAGaACg -3'
miRNA:   3'- aCUGCCuGCCuaGGCAGgaCCUCgUG- -5'
11101 3' -57.8 NC_002794.1 + 140188 0.66 0.870432
Target:  5'- cGGC-GACGGcgUCGUCgaGGGGCGa -3'
miRNA:   3'- aCUGcCUGCCuaGGCAGgaCCUCGUg -5'
11101 3' -57.8 NC_002794.1 + 83944 0.66 0.877466
Target:  5'- aGACcgccuGGACcgccuGGG-CCG-CCUGGAGCGCc -3'
miRNA:   3'- aCUG-----CCUG-----CCUaGGCaGGACCUCGUG- -5'
11101 3' -57.8 NC_002794.1 + 62502 0.66 0.877466
Target:  5'- cGGCGGGCGGcgCCG-CC---GGCGCc -3'
miRNA:   3'- aCUGCCUGCCuaGGCaGGaccUCGUG- -5'
11101 3' -57.8 NC_002794.1 + 95860 0.66 0.886969
Target:  5'- cGGCGGGCGGG-CCGUUUcagugUGGcgacccggcggcgagGGCGCa -3'
miRNA:   3'- aCUGCCUGCCUaGGCAGG-----ACC---------------UCGUG- -5'
11101 3' -57.8 NC_002794.1 + 5009 0.66 0.890916
Target:  5'- cGACGGAcuCGGAcUCgCGUCC-GGGGUg- -3'
miRNA:   3'- aCUGCCU--GCCU-AG-GCAGGaCCUCGug -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.