miRNA display CGI


Results 21 - 40 of 51 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11101 3' -57.8 NC_002794.1 + 121943 0.67 0.855765
Target:  5'- cGACGcGCuGAUCgagCG-CCUGGAGCGCu -3'
miRNA:   3'- aCUGCcUGcCUAG---GCaGGACCUCGUG- -5'
11101 3' -57.8 NC_002794.1 + 112296 0.67 0.855765
Target:  5'- gGGCGGcccccCGGGUCCGacuucggcgCCgacggcggGGAGCGCg -3'
miRNA:   3'- aCUGCCu----GCCUAGGCa--------GGa-------CCUCGUG- -5'
11101 3' -57.8 NC_002794.1 + 150449 0.67 0.847372
Target:  5'- gGGCGGguGCGGAUCCcggaaggcucccgGUUCUGGcuCACg -3'
miRNA:   3'- aCUGCC--UGCCUAGG-------------CAGGACCucGUG- -5'
11101 3' -57.8 NC_002794.1 + 87335 0.67 0.845044
Target:  5'- cGGCGGcagguuccccagcaGCGGGUCCGgcggcgagcggcgUUCUGGgcGGCGCg -3'
miRNA:   3'- aCUGCC--------------UGCCUAGGC-------------AGGACC--UCGUG- -5'
11101 3' -57.8 NC_002794.1 + 115880 0.67 0.824203
Target:  5'- gGGCGucCGGGg-CGUCCgcGGAGCGCg -3'
miRNA:   3'- aCUGCcuGCCUagGCAGGa-CCUCGUG- -5'
11101 3' -57.8 NC_002794.1 + 180082 0.68 0.819232
Target:  5'- cGGCGGACGGuAucggugcgcagggcuUCCGUCCgcaguuGCACg -3'
miRNA:   3'- aCUGCCUGCC-U---------------AGGCAGGaccu--CGUG- -5'
11101 3' -57.8 NC_002794.1 + 150809 0.68 0.807412
Target:  5'- cGGCGGACGGccgagCCG--CUGGAGCu- -3'
miRNA:   3'- aCUGCCUGCCua---GGCagGACCUCGug -5'
11101 3' -57.8 NC_002794.1 + 129080 0.68 0.807412
Target:  5'- cUGGCGG-CGGA-CCGUCCggugGGuGgACu -3'
miRNA:   3'- -ACUGCCuGCCUaGGCAGGa---CCuCgUG- -5'
11101 3' -57.8 NC_002794.1 + 110274 0.68 0.807412
Target:  5'- cGACGG-CGGccgCCGUCCUcGGGCcCg -3'
miRNA:   3'- aCUGCCuGCCua-GGCAGGAcCUCGuG- -5'
11101 3' -57.8 NC_002794.1 + 128539 0.68 0.807412
Target:  5'- gGACGGuCGGGUgcgCCGUCCUgcuGGucaucGCGCu -3'
miRNA:   3'- aCUGCCuGCCUA---GGCAGGA---CCu----CGUG- -5'
11101 3' -57.8 NC_002794.1 + 19502 0.68 0.798789
Target:  5'- cGACGG-CGGAggucgcgCCG-CUcGGAGCGCc -3'
miRNA:   3'- aCUGCCuGCCUa------GGCaGGaCCUCGUG- -5'
11101 3' -57.8 NC_002794.1 + 12228 0.68 0.798789
Target:  5'- cGGCGGcgccgGCGGcgCCGUCCgc-GGCGCc -3'
miRNA:   3'- aCUGCC-----UGCCuaGGCAGGaccUCGUG- -5'
11101 3' -57.8 NC_002794.1 + 106358 0.68 0.781127
Target:  5'- cGGCGGGCGGGcgCCGgUUCgcgcGGAGgGCa -3'
miRNA:   3'- aCUGCCUGCCUa-GGC-AGGa---CCUCgUG- -5'
11101 3' -57.8 NC_002794.1 + 111776 0.69 0.772104
Target:  5'- gGGCGGGCucGUUCGUCa-GGAGCGCc -3'
miRNA:   3'- aCUGCCUGccUAGGCAGgaCCUCGUG- -5'
11101 3' -57.8 NC_002794.1 + 134110 0.69 0.762963
Target:  5'- cGACGGACccccUCCGUCCgacggcgcgGcGAGCGCg -3'
miRNA:   3'- aCUGCCUGccu-AGGCAGGa--------C-CUCGUG- -5'
11101 3' -57.8 NC_002794.1 + 107093 0.69 0.762963
Target:  5'- cGACGGGCGGGggUgUGUCgCUGcGAGcCGCg -3'
miRNA:   3'- aCUGCCUGCCU--AgGCAG-GAC-CUC-GUG- -5'
11101 3' -57.8 NC_002794.1 + 153613 0.69 0.734922
Target:  5'- aGACGGcGCGGG-CCGccuaucCCUGGuGGCACg -3'
miRNA:   3'- aCUGCC-UGCCUaGGCa-----GGACC-UCGUG- -5'
11101 3' -57.8 NC_002794.1 + 120733 0.69 0.725396
Target:  5'- cGugGGcACGG--CgGUCCgGGAGCGCa -3'
miRNA:   3'- aCugCC-UGCCuaGgCAGGaCCUCGUG- -5'
11101 3' -57.8 NC_002794.1 + 19984 0.7 0.706126
Target:  5'- --uCGGGCuG-UCCGUCCUGGuGGCGCu -3'
miRNA:   3'- acuGCCUGcCuAGGCAGGACC-UCGUG- -5'
11101 3' -57.8 NC_002794.1 + 103815 0.7 0.706126
Target:  5'- cGACGG-CGGcgCCGaCgUGGAGuCGCa -3'
miRNA:   3'- aCUGCCuGCCuaGGCaGgACCUC-GUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.