miRNA display CGI


Results 41 - 51 of 51 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11101 3' -57.8 NC_002794.1 + 89814 0.71 0.657066
Target:  5'- -cGCGuGugGGGUgCGUCCUGGGGaACg -3'
miRNA:   3'- acUGC-CugCCUAgGCAGGACCUCgUG- -5'
11101 3' -57.8 NC_002794.1 + 60628 0.72 0.597647
Target:  5'- gGACGGGCGGAcCCGgcgCC-GGcGGCGCc -3'
miRNA:   3'- aCUGCCUGCCUaGGCa--GGaCC-UCGUG- -5'
11101 3' -57.8 NC_002794.1 + 21522 0.73 0.548712
Target:  5'- gGACGGGCGGAUCgGgaucggcuagcUCC-GGAGCGg -3'
miRNA:   3'- aCUGCCUGCCUAGgC-----------AGGaCCUCGUg -5'
11101 3' -57.8 NC_002794.1 + 105063 0.73 0.548712
Target:  5'- --cUGGACGGGgucgCCGUCCaGGuGCGCg -3'
miRNA:   3'- acuGCCUGCCUa---GGCAGGaCCuCGUG- -5'
11101 3' -57.8 NC_002794.1 + 101653 0.73 0.510483
Target:  5'- gGGCGGGCGGcgguuagcCCGUCCgaaacgccggcGGAGCGCg -3'
miRNA:   3'- aCUGCCUGCCua------GGCAGGa----------CCUCGUG- -5'
11101 3' -57.8 NC_002794.1 + 138971 0.74 0.455387
Target:  5'- cGGCGGACGGGUUgG-CCUGGcgggccuGCGCg -3'
miRNA:   3'- aCUGCCUGCCUAGgCaGGACCu------CGUG- -5'
11101 3' -57.8 NC_002794.1 + 123794 0.74 0.446515
Target:  5'- aGGCGG-UGGcgCCGUUCgGGGGCGCg -3'
miRNA:   3'- aCUGCCuGCCuaGGCAGGaCCUCGUG- -5'
11101 3' -57.8 NC_002794.1 + 129844 0.75 0.395408
Target:  5'- aGGCGGAgCGGAaccUCCGUCgCgaacggGGGGCGCa -3'
miRNA:   3'- aCUGCCU-GCCU---AGGCAG-Ga-----CCUCGUG- -5'
11101 3' -57.8 NC_002794.1 + 80606 0.76 0.379231
Target:  5'- cUGACGGACGGAcUCUG-CCUGccggccGAGCACc -3'
miRNA:   3'- -ACUGCCUGCCU-AGGCaGGAC------CUCGUG- -5'
11101 3' -57.8 NC_002794.1 + 66632 0.78 0.291812
Target:  5'- gUGGCGGGaGGAggUCCGUCCgGGGGCAUc -3'
miRNA:   3'- -ACUGCCUgCCU--AGGCAGGaCCUCGUG- -5'
11101 3' -57.8 NC_002794.1 + 53674 0.82 0.157364
Target:  5'- ---aGGACGGAUCCGUCCgucaaacGGAGCGCc -3'
miRNA:   3'- acugCCUGCCUAGGCAGGa------CCUCGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.