miRNA display CGI


Results 1 - 20 of 51 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11101 3' -57.8 NC_002794.1 + 5009 0.66 0.890916
Target:  5'- cGACGGAcuCGGAcUCgCGUCC-GGGGUg- -3'
miRNA:   3'- aCUGCCU--GCCU-AG-GCAGGaCCUCGug -5'
11101 3' -57.8 NC_002794.1 + 12228 0.68 0.798789
Target:  5'- cGGCGGcgccgGCGGcgCCGUCCgc-GGCGCc -3'
miRNA:   3'- aCUGCC-----UGCCuaGGCAGGaccUCGUG- -5'
11101 3' -57.8 NC_002794.1 + 19502 0.68 0.798789
Target:  5'- cGACGG-CGGAggucgcgCCG-CUcGGAGCGCc -3'
miRNA:   3'- aCUGCCuGCCUa------GGCaGGaCCUCGUG- -5'
11101 3' -57.8 NC_002794.1 + 19984 0.7 0.706126
Target:  5'- --uCGGGCuG-UCCGUCCUGGuGGCGCu -3'
miRNA:   3'- acuGCCUGcCuAGGCAGGACC-UCGUG- -5'
11101 3' -57.8 NC_002794.1 + 21522 0.73 0.548712
Target:  5'- gGACGGGCGGAUCgGgaucggcuagcUCC-GGAGCGg -3'
miRNA:   3'- aCUGCCUGCCUAGgC-----------AGGaCCUCGUg -5'
11101 3' -57.8 NC_002794.1 + 37754 0.66 0.903512
Target:  5'- cGGCGcGGCGGcgCCGgcg-GGAGCGg -3'
miRNA:   3'- aCUGC-CUGCCuaGGCaggaCCUCGUg -5'
11101 3' -57.8 NC_002794.1 + 53674 0.82 0.157364
Target:  5'- ---aGGACGGAUCCGUCCgucaaacGGAGCGCc -3'
miRNA:   3'- acugCCUGCCUAGGCAGGa------CCUCGUG- -5'
11101 3' -57.8 NC_002794.1 + 58386 0.66 0.903512
Target:  5'- aGGCGcGCGGGcgCCagcUgCUGGAGCACg -3'
miRNA:   3'- aCUGCcUGCCUa-GGc--AgGACCUCGUG- -5'
11101 3' -57.8 NC_002794.1 + 60628 0.72 0.597647
Target:  5'- gGACGGGCGGAcCCGgcgCC-GGcGGCGCc -3'
miRNA:   3'- aCUGCCUGCCUaGGCa--GGaCC-UCGUG- -5'
11101 3' -57.8 NC_002794.1 + 62502 0.66 0.877466
Target:  5'- cGGCGGGCGGcgCCG-CC---GGCGCc -3'
miRNA:   3'- aCUGCCUGCCuaGGCaGGaccUCGUG- -5'
11101 3' -57.8 NC_002794.1 + 66632 0.78 0.291812
Target:  5'- gUGGCGGGaGGAggUCCGUCCgGGGGCAUc -3'
miRNA:   3'- -ACUGCCUgCCU--AGGCAGGaCCUCGUG- -5'
11101 3' -57.8 NC_002794.1 + 78010 0.66 0.870432
Target:  5'- cGGCGG-CGGcgCCGUCg-GGAGaACg -3'
miRNA:   3'- aCUGCCuGCCuaGGCAGgaCCUCgUG- -5'
11101 3' -57.8 NC_002794.1 + 80606 0.76 0.379231
Target:  5'- cUGACGGACGGAcUCUG-CCUGccggccGAGCACc -3'
miRNA:   3'- -ACUGCCUGCCU-AGGCaGGAC------CUCGUG- -5'
11101 3' -57.8 NC_002794.1 + 83944 0.66 0.877466
Target:  5'- aGACcgccuGGACcgccuGGG-CCG-CCUGGAGCGCc -3'
miRNA:   3'- aCUG-----CCUG-----CCUaGGCaGGACCUCGUG- -5'
11101 3' -57.8 NC_002794.1 + 87335 0.67 0.845044
Target:  5'- cGGCGGcagguuccccagcaGCGGGUCCGgcggcgagcggcgUUCUGGgcGGCGCg -3'
miRNA:   3'- aCUGCC--------------UGCCUAGGC-------------AGGACC--UCGUG- -5'
11101 3' -57.8 NC_002794.1 + 89814 0.71 0.657066
Target:  5'- -cGCGuGugGGGUgCGUCCUGGGGaACg -3'
miRNA:   3'- acUGC-CugCCUAgGCAGGACCUCgUG- -5'
11101 3' -57.8 NC_002794.1 + 91226 0.66 0.890916
Target:  5'- cGGCGGACGGcgcggcggCCGUCg-GGcuGCGCu -3'
miRNA:   3'- aCUGCCUGCCua------GGCAGgaCCu-CGUG- -5'
11101 3' -57.8 NC_002794.1 + 95860 0.66 0.886969
Target:  5'- cGGCGGGCGGG-CCGUUUcagugUGGcgacccggcggcgagGGCGCa -3'
miRNA:   3'- aCUGCCUGCCUaGGCAGG-----ACC---------------UCGUG- -5'
11101 3' -57.8 NC_002794.1 + 99439 0.67 0.855765
Target:  5'- uUGuuGGAcCGGAUCCG-CCgccgGGGGUAUc -3'
miRNA:   3'- -ACugCCU-GCCUAGGCaGGa---CCUCGUG- -5'
11101 3' -57.8 NC_002794.1 + 101653 0.73 0.510483
Target:  5'- gGGCGGGCGGcgguuagcCCGUCCgaaacgccggcGGAGCGCg -3'
miRNA:   3'- aCUGCCUGCCua------GGCAGGa----------CCUCGUG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.