miRNA display CGI


Results 21 - 40 of 51 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11101 3' -57.8 NC_002794.1 + 103815 0.7 0.706126
Target:  5'- cGACGG-CGGcgCCGaCgUGGAGuCGCa -3'
miRNA:   3'- aCUGCCuGCCuaGGCaGgACCUC-GUG- -5'
11101 3' -57.8 NC_002794.1 + 105063 0.73 0.548712
Target:  5'- --cUGGACGGGgucgCCGUCCaGGuGCGCg -3'
miRNA:   3'- acuGCCUGCCUa---GGCAGGaCCuCGUG- -5'
11101 3' -57.8 NC_002794.1 + 105128 0.67 0.855765
Target:  5'- aGACGGucaGGAUgCgGUCgC-GGAGCACg -3'
miRNA:   3'- aCUGCCug-CCUA-GgCAG-GaCCUCGUG- -5'
11101 3' -57.8 NC_002794.1 + 105807 0.66 0.902903
Target:  5'- aGACGGAccgaaagcgcgacCGGGUCgGUCgaGcGAGCGg -3'
miRNA:   3'- aCUGCCU-------------GCCUAGgCAGgaC-CUCGUg -5'
11101 3' -57.8 NC_002794.1 + 106358 0.68 0.781127
Target:  5'- cGGCGGGCGGGcgCCGgUUCgcgcGGAGgGCa -3'
miRNA:   3'- aCUGCCUGCCUa-GGC-AGGa---CCUCgUG- -5'
11101 3' -57.8 NC_002794.1 + 107093 0.69 0.762963
Target:  5'- cGACGGGCGGGggUgUGUCgCUGcGAGcCGCg -3'
miRNA:   3'- aCUGCCUGCCU--AgGCAG-GAC-CUC-GUG- -5'
11101 3' -57.8 NC_002794.1 + 108139 0.66 0.897323
Target:  5'- cGcCGGcUGGAUUCG-CCgccgGGAGCGCc -3'
miRNA:   3'- aCuGCCuGCCUAGGCaGGa---CCUCGUG- -5'
11101 3' -57.8 NC_002794.1 + 110274 0.68 0.807412
Target:  5'- cGACGG-CGGccgCCGUCCUcGGGCcCg -3'
miRNA:   3'- aCUGCCuGCCua-GGCAGGAcCUCGuG- -5'
11101 3' -57.8 NC_002794.1 + 111776 0.69 0.772104
Target:  5'- gGGCGGGCucGUUCGUCa-GGAGCGCc -3'
miRNA:   3'- aCUGCCUGccUAGGCAGgaCCUCGUG- -5'
11101 3' -57.8 NC_002794.1 + 112296 0.67 0.855765
Target:  5'- gGGCGGcccccCGGGUCCGacuucggcgCCgacggcggGGAGCGCg -3'
miRNA:   3'- aCUGCCu----GCCUAGGCa--------GGa-------CCUCGUG- -5'
11101 3' -57.8 NC_002794.1 + 114501 0.66 0.903512
Target:  5'- -cGCGcGcCGGA-CCGUCCcGGAGCGa -3'
miRNA:   3'- acUGC-CuGCCUaGGCAGGaCCUCGUg -5'
11101 3' -57.8 NC_002794.1 + 115880 0.67 0.824203
Target:  5'- gGGCGucCGGGg-CGUCCgcGGAGCGCg -3'
miRNA:   3'- aCUGCcuGCCUagGCAGGa-CCUCGUG- -5'
11101 3' -57.8 NC_002794.1 + 118968 0.66 0.869717
Target:  5'- gUGACGGucaggugGCGGAgcaCGUCC-GG-GCGCg -3'
miRNA:   3'- -ACUGCC-------UGCCUag-GCAGGaCCuCGUG- -5'
11101 3' -57.8 NC_002794.1 + 120733 0.69 0.725396
Target:  5'- cGugGGcACGG--CgGUCCgGGAGCGCa -3'
miRNA:   3'- aCugCC-UGCCuaGgCAGGaCCUCGUG- -5'
11101 3' -57.8 NC_002794.1 + 121943 0.67 0.855765
Target:  5'- cGACGcGCuGAUCgagCG-CCUGGAGCGCu -3'
miRNA:   3'- aCUGCcUGcCUAG---GCaGGACCUCGUG- -5'
11101 3' -57.8 NC_002794.1 + 123794 0.74 0.446515
Target:  5'- aGGCGG-UGGcgCCGUUCgGGGGCGCg -3'
miRNA:   3'- aCUGCCuGCCuaGGCAGGaCCUCGUG- -5'
11101 3' -57.8 NC_002794.1 + 128539 0.68 0.807412
Target:  5'- gGACGGuCGGGUgcgCCGUCCUgcuGGucaucGCGCu -3'
miRNA:   3'- aCUGCCuGCCUA---GGCAGGA---CCu----CGUG- -5'
11101 3' -57.8 NC_002794.1 + 129080 0.68 0.807412
Target:  5'- cUGGCGG-CGGA-CCGUCCggugGGuGgACu -3'
miRNA:   3'- -ACUGCCuGCCUaGGCAGGa---CCuCgUG- -5'
11101 3' -57.8 NC_002794.1 + 129429 0.66 0.903512
Target:  5'- gGACGGGCGGAgcgaGUCUgaaccGGAGUg- -3'
miRNA:   3'- aCUGCCUGCCUagg-CAGGa----CCUCGug -5'
11101 3' -57.8 NC_002794.1 + 129844 0.75 0.395408
Target:  5'- aGGCGGAgCGGAaccUCCGUCgCgaacggGGGGCGCa -3'
miRNA:   3'- aCUGCCU-GCCU---AGGCAG-Ga-----CCUCGUG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.