Results 1 - 20 of 51 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
11101 | 3' | -57.8 | NC_002794.1 | + | 180082 | 0.68 | 0.819232 |
Target: 5'- cGGCGGACGGuAucggugcgcagggcuUCCGUCCgcaguuGCACg -3' miRNA: 3'- aCUGCCUGCC-U---------------AGGCAGGaccu--CGUG- -5' |
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11101 | 3' | -57.8 | NC_002794.1 | + | 153613 | 0.69 | 0.734922 |
Target: 5'- aGACGGcGCGGG-CCGccuaucCCUGGuGGCACg -3' miRNA: 3'- aCUGCC-UGCCUaGGCa-----GGACC-UCGUG- -5' |
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11101 | 3' | -57.8 | NC_002794.1 | + | 150809 | 0.68 | 0.807412 |
Target: 5'- cGGCGGACGGccgagCCG--CUGGAGCu- -3' miRNA: 3'- aCUGCCUGCCua---GGCagGACCUCGug -5' |
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11101 | 3' | -57.8 | NC_002794.1 | + | 150449 | 0.67 | 0.847372 |
Target: 5'- gGGCGGguGCGGAUCCcggaaggcucccgGUUCUGGcuCACg -3' miRNA: 3'- aCUGCC--UGCCUAGG-------------CAGGACCucGUG- -5' |
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11101 | 3' | -57.8 | NC_002794.1 | + | 148371 | 0.66 | 0.890916 |
Target: 5'- cGAuCGGcaGCGGggCCa-UCUGGAGCGCg -3' miRNA: 3'- aCU-GCC--UGCCuaGGcaGGACCUCGUG- -5' |
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11101 | 3' | -57.8 | NC_002794.1 | + | 141429 | 0.66 | 0.897323 |
Target: 5'- gGGCGG-CGGGggCG-CCgGGGGCGCc -3' miRNA: 3'- aCUGCCuGCCUagGCaGGaCCUCGUG- -5' |
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11101 | 3' | -57.8 | NC_002794.1 | + | 140188 | 0.66 | 0.870432 |
Target: 5'- cGGC-GACGGcgUCGUCgaGGGGCGa -3' miRNA: 3'- aCUGcCUGCCuaGGCAGgaCCUCGUg -5' |
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11101 | 3' | -57.8 | NC_002794.1 | + | 138971 | 0.74 | 0.455387 |
Target: 5'- cGGCGGACGGGUUgG-CCUGGcgggccuGCGCg -3' miRNA: 3'- aCUGCCUGCCUAGgCaGGACCu------CGUG- -5' |
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11101 | 3' | -57.8 | NC_002794.1 | + | 138098 | 0.66 | 0.903512 |
Target: 5'- -aGCGG-CGGA-CCGUCUgcaGGAGgGCg -3' miRNA: 3'- acUGCCuGCCUaGGCAGGa--CCUCgUG- -5' |
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11101 | 3' | -57.8 | NC_002794.1 | + | 137619 | 0.66 | 0.893504 |
Target: 5'- cGGCGG-CGGugcccacgacgaCGUCCUGGcgGGCGCc -3' miRNA: 3'- aCUGCCuGCCuag---------GCAGGACC--UCGUG- -5' |
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11101 | 3' | -57.8 | NC_002794.1 | + | 134110 | 0.69 | 0.762963 |
Target: 5'- cGACGGACccccUCCGUCCgacggcgcgGcGAGCGCg -3' miRNA: 3'- aCUGCCUGccu-AGGCAGGa--------C-CUCGUG- -5' |
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11101 | 3' | -57.8 | NC_002794.1 | + | 129844 | 0.75 | 0.395408 |
Target: 5'- aGGCGGAgCGGAaccUCCGUCgCgaacggGGGGCGCa -3' miRNA: 3'- aCUGCCU-GCCU---AGGCAG-Ga-----CCUCGUG- -5' |
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11101 | 3' | -57.8 | NC_002794.1 | + | 129429 | 0.66 | 0.903512 |
Target: 5'- gGACGGGCGGAgcgaGUCUgaaccGGAGUg- -3' miRNA: 3'- aCUGCCUGCCUagg-CAGGa----CCUCGug -5' |
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11101 | 3' | -57.8 | NC_002794.1 | + | 129080 | 0.68 | 0.807412 |
Target: 5'- cUGGCGG-CGGA-CCGUCCggugGGuGgACu -3' miRNA: 3'- -ACUGCCuGCCUaGGCAGGa---CCuCgUG- -5' |
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11101 | 3' | -57.8 | NC_002794.1 | + | 128539 | 0.68 | 0.807412 |
Target: 5'- gGACGGuCGGGUgcgCCGUCCUgcuGGucaucGCGCu -3' miRNA: 3'- aCUGCCuGCCUA---GGCAGGA---CCu----CGUG- -5' |
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11101 | 3' | -57.8 | NC_002794.1 | + | 123794 | 0.74 | 0.446515 |
Target: 5'- aGGCGG-UGGcgCCGUUCgGGGGCGCg -3' miRNA: 3'- aCUGCCuGCCuaGGCAGGaCCUCGUG- -5' |
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11101 | 3' | -57.8 | NC_002794.1 | + | 121943 | 0.67 | 0.855765 |
Target: 5'- cGACGcGCuGAUCgagCG-CCUGGAGCGCu -3' miRNA: 3'- aCUGCcUGcCUAG---GCaGGACCUCGUG- -5' |
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11101 | 3' | -57.8 | NC_002794.1 | + | 120733 | 0.69 | 0.725396 |
Target: 5'- cGugGGcACGG--CgGUCCgGGAGCGCa -3' miRNA: 3'- aCugCC-UGCCuaGgCAGGaCCUCGUG- -5' |
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11101 | 3' | -57.8 | NC_002794.1 | + | 118968 | 0.66 | 0.869717 |
Target: 5'- gUGACGGucaggugGCGGAgcaCGUCC-GG-GCGCg -3' miRNA: 3'- -ACUGCC-------UGCCUag-GCAGGaCCuCGUG- -5' |
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11101 | 3' | -57.8 | NC_002794.1 | + | 115880 | 0.67 | 0.824203 |
Target: 5'- gGGCGucCGGGg-CGUCCgcGGAGCGCg -3' miRNA: 3'- aCUGCcuGCCUagGCAGGa-CCUCGUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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