miRNA display CGI


Results 21 - 40 of 51 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11101 3' -57.8 NC_002794.1 + 114501 0.66 0.903512
Target:  5'- -cGCGcGcCGGA-CCGUCCcGGAGCGa -3'
miRNA:   3'- acUGC-CuGCCUaGGCAGGaCCUCGUg -5'
11101 3' -57.8 NC_002794.1 + 112296 0.67 0.855765
Target:  5'- gGGCGGcccccCGGGUCCGacuucggcgCCgacggcggGGAGCGCg -3'
miRNA:   3'- aCUGCCu----GCCUAGGCa--------GGa-------CCUCGUG- -5'
11101 3' -57.8 NC_002794.1 + 111776 0.69 0.772104
Target:  5'- gGGCGGGCucGUUCGUCa-GGAGCGCc -3'
miRNA:   3'- aCUGCCUGccUAGGCAGgaCCUCGUG- -5'
11101 3' -57.8 NC_002794.1 + 110274 0.68 0.807412
Target:  5'- cGACGG-CGGccgCCGUCCUcGGGCcCg -3'
miRNA:   3'- aCUGCCuGCCua-GGCAGGAcCUCGuG- -5'
11101 3' -57.8 NC_002794.1 + 108139 0.66 0.897323
Target:  5'- cGcCGGcUGGAUUCG-CCgccgGGAGCGCc -3'
miRNA:   3'- aCuGCCuGCCUAGGCaGGa---CCUCGUG- -5'
11101 3' -57.8 NC_002794.1 + 107093 0.69 0.762963
Target:  5'- cGACGGGCGGGggUgUGUCgCUGcGAGcCGCg -3'
miRNA:   3'- aCUGCCUGCCU--AgGCAG-GAC-CUC-GUG- -5'
11101 3' -57.8 NC_002794.1 + 106358 0.68 0.781127
Target:  5'- cGGCGGGCGGGcgCCGgUUCgcgcGGAGgGCa -3'
miRNA:   3'- aCUGCCUGCCUa-GGC-AGGa---CCUCgUG- -5'
11101 3' -57.8 NC_002794.1 + 105807 0.66 0.902903
Target:  5'- aGACGGAccgaaagcgcgacCGGGUCgGUCgaGcGAGCGg -3'
miRNA:   3'- aCUGCCU-------------GCCUAGgCAGgaC-CUCGUg -5'
11101 3' -57.8 NC_002794.1 + 105128 0.67 0.855765
Target:  5'- aGACGGucaGGAUgCgGUCgC-GGAGCACg -3'
miRNA:   3'- aCUGCCug-CCUA-GgCAG-GaCCUCGUG- -5'
11101 3' -57.8 NC_002794.1 + 105063 0.73 0.548712
Target:  5'- --cUGGACGGGgucgCCGUCCaGGuGCGCg -3'
miRNA:   3'- acuGCCUGCCUa---GGCAGGaCCuCGUG- -5'
11101 3' -57.8 NC_002794.1 + 103815 0.7 0.706126
Target:  5'- cGACGG-CGGcgCCGaCgUGGAGuCGCa -3'
miRNA:   3'- aCUGCCuGCCuaGGCaGgACCUC-GUG- -5'
11101 3' -57.8 NC_002794.1 + 101653 0.73 0.510483
Target:  5'- gGGCGGGCGGcgguuagcCCGUCCgaaacgccggcGGAGCGCg -3'
miRNA:   3'- aCUGCCUGCCua------GGCAGGa----------CCUCGUG- -5'
11101 3' -57.8 NC_002794.1 + 99439 0.67 0.855765
Target:  5'- uUGuuGGAcCGGAUCCG-CCgccgGGGGUAUc -3'
miRNA:   3'- -ACugCCU-GCCUAGGCaGGa---CCUCGUG- -5'
11101 3' -57.8 NC_002794.1 + 95860 0.66 0.886969
Target:  5'- cGGCGGGCGGG-CCGUUUcagugUGGcgacccggcggcgagGGCGCa -3'
miRNA:   3'- aCUGCCUGCCUaGGCAGG-----ACC---------------UCGUG- -5'
11101 3' -57.8 NC_002794.1 + 91226 0.66 0.890916
Target:  5'- cGGCGGACGGcgcggcggCCGUCg-GGcuGCGCu -3'
miRNA:   3'- aCUGCCUGCCua------GGCAGgaCCu-CGUG- -5'
11101 3' -57.8 NC_002794.1 + 89814 0.71 0.657066
Target:  5'- -cGCGuGugGGGUgCGUCCUGGGGaACg -3'
miRNA:   3'- acUGC-CugCCUAgGCAGGACCUCgUG- -5'
11101 3' -57.8 NC_002794.1 + 87335 0.67 0.845044
Target:  5'- cGGCGGcagguuccccagcaGCGGGUCCGgcggcgagcggcgUUCUGGgcGGCGCg -3'
miRNA:   3'- aCUGCC--------------UGCCUAGGC-------------AGGACC--UCGUG- -5'
11101 3' -57.8 NC_002794.1 + 83944 0.66 0.877466
Target:  5'- aGACcgccuGGACcgccuGGG-CCG-CCUGGAGCGCc -3'
miRNA:   3'- aCUG-----CCUG-----CCUaGGCaGGACCUCGUG- -5'
11101 3' -57.8 NC_002794.1 + 80606 0.76 0.379231
Target:  5'- cUGACGGACGGAcUCUG-CCUGccggccGAGCACc -3'
miRNA:   3'- -ACUGCCUGCCU-AGGCaGGAC------CUCGUG- -5'
11101 3' -57.8 NC_002794.1 + 78010 0.66 0.870432
Target:  5'- cGGCGG-CGGcgCCGUCg-GGAGaACg -3'
miRNA:   3'- aCUGCCuGCCuaGGCAGgaCCUCgUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.