miRNA display CGI


Results 41 - 51 of 51 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11101 3' -57.8 NC_002794.1 + 87335 0.67 0.845044
Target:  5'- cGGCGGcagguuccccagcaGCGGGUCCGgcggcgagcggcgUUCUGGgcGGCGCg -3'
miRNA:   3'- aCUGCC--------------UGCCUAGGC-------------AGGACC--UCGUG- -5'
11101 3' -57.8 NC_002794.1 + 99439 0.67 0.855765
Target:  5'- uUGuuGGAcCGGAUCCG-CCgccgGGGGUAUc -3'
miRNA:   3'- -ACugCCU-GCCUAGGCaGGa---CCUCGUG- -5'
11101 3' -57.8 NC_002794.1 + 150449 0.67 0.847372
Target:  5'- gGGCGGguGCGGAUCCcggaaggcucccgGUUCUGGcuCACg -3'
miRNA:   3'- aCUGCC--UGCCUAGG-------------CAGGACCucGUG- -5'
11101 3' -57.8 NC_002794.1 + 105128 0.67 0.855765
Target:  5'- aGACGGucaGGAUgCgGUCgC-GGAGCACg -3'
miRNA:   3'- aCUGCCug-CCUA-GgCAG-GaCCUCGUG- -5'
11101 3' -57.8 NC_002794.1 + 121943 0.67 0.855765
Target:  5'- cGACGcGCuGAUCgagCG-CCUGGAGCGCu -3'
miRNA:   3'- aCUGCcUGcCUAG---GCaGGACCUCGUG- -5'
11101 3' -57.8 NC_002794.1 + 112296 0.67 0.855765
Target:  5'- gGGCGGcccccCGGGUCCGacuucggcgCCgacggcggGGAGCGCg -3'
miRNA:   3'- aCUGCCu----GCCUAGGCa--------GGa-------CCUCGUG- -5'
11101 3' -57.8 NC_002794.1 + 118968 0.66 0.869717
Target:  5'- gUGACGGucaggugGCGGAgcaCGUCC-GG-GCGCg -3'
miRNA:   3'- -ACUGCC-------UGCCUag-GCAGGaCCuCGUG- -5'
11101 3' -57.8 NC_002794.1 + 83944 0.66 0.877466
Target:  5'- aGACcgccuGGACcgccuGGG-CCG-CCUGGAGCGCc -3'
miRNA:   3'- aCUG-----CCUG-----CCUaGGCaGGACCUCGUG- -5'
11101 3' -57.8 NC_002794.1 + 62502 0.66 0.877466
Target:  5'- cGGCGGGCGGcgCCG-CC---GGCGCc -3'
miRNA:   3'- aCUGCCUGCCuaGGCaGGaccUCGUG- -5'
11101 3' -57.8 NC_002794.1 + 140188 0.66 0.870432
Target:  5'- cGGC-GACGGcgUCGUCgaGGGGCGa -3'
miRNA:   3'- aCUGcCUGCCuaGGCAGgaCCUCGUg -5'
11101 3' -57.8 NC_002794.1 + 129429 0.66 0.903512
Target:  5'- gGACGGGCGGAgcgaGUCUgaaccGGAGUg- -3'
miRNA:   3'- aCUGCCUGCCUagg-CAGGa----CCUCGug -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.