Results 41 - 51 of 51 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
11101 | 3' | -57.8 | NC_002794.1 | + | 87335 | 0.67 | 0.845044 |
Target: 5'- cGGCGGcagguuccccagcaGCGGGUCCGgcggcgagcggcgUUCUGGgcGGCGCg -3' miRNA: 3'- aCUGCC--------------UGCCUAGGC-------------AGGACC--UCGUG- -5' |
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11101 | 3' | -57.8 | NC_002794.1 | + | 99439 | 0.67 | 0.855765 |
Target: 5'- uUGuuGGAcCGGAUCCG-CCgccgGGGGUAUc -3' miRNA: 3'- -ACugCCU-GCCUAGGCaGGa---CCUCGUG- -5' |
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11101 | 3' | -57.8 | NC_002794.1 | + | 150449 | 0.67 | 0.847372 |
Target: 5'- gGGCGGguGCGGAUCCcggaaggcucccgGUUCUGGcuCACg -3' miRNA: 3'- aCUGCC--UGCCUAGG-------------CAGGACCucGUG- -5' |
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11101 | 3' | -57.8 | NC_002794.1 | + | 105128 | 0.67 | 0.855765 |
Target: 5'- aGACGGucaGGAUgCgGUCgC-GGAGCACg -3' miRNA: 3'- aCUGCCug-CCUA-GgCAG-GaCCUCGUG- -5' |
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11101 | 3' | -57.8 | NC_002794.1 | + | 121943 | 0.67 | 0.855765 |
Target: 5'- cGACGcGCuGAUCgagCG-CCUGGAGCGCu -3' miRNA: 3'- aCUGCcUGcCUAG---GCaGGACCUCGUG- -5' |
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11101 | 3' | -57.8 | NC_002794.1 | + | 112296 | 0.67 | 0.855765 |
Target: 5'- gGGCGGcccccCGGGUCCGacuucggcgCCgacggcggGGAGCGCg -3' miRNA: 3'- aCUGCCu----GCCUAGGCa--------GGa-------CCUCGUG- -5' |
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11101 | 3' | -57.8 | NC_002794.1 | + | 118968 | 0.66 | 0.869717 |
Target: 5'- gUGACGGucaggugGCGGAgcaCGUCC-GG-GCGCg -3' miRNA: 3'- -ACUGCC-------UGCCUag-GCAGGaCCuCGUG- -5' |
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11101 | 3' | -57.8 | NC_002794.1 | + | 83944 | 0.66 | 0.877466 |
Target: 5'- aGACcgccuGGACcgccuGGG-CCG-CCUGGAGCGCc -3' miRNA: 3'- aCUG-----CCUG-----CCUaGGCaGGACCUCGUG- -5' |
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11101 | 3' | -57.8 | NC_002794.1 | + | 62502 | 0.66 | 0.877466 |
Target: 5'- cGGCGGGCGGcgCCG-CC---GGCGCc -3' miRNA: 3'- aCUGCCUGCCuaGGCaGGaccUCGUG- -5' |
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11101 | 3' | -57.8 | NC_002794.1 | + | 140188 | 0.66 | 0.870432 |
Target: 5'- cGGC-GACGGcgUCGUCgaGGGGCGa -3' miRNA: 3'- aCUGcCUGCCuaGGCAGgaCCUCGUg -5' |
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11101 | 3' | -57.8 | NC_002794.1 | + | 129429 | 0.66 | 0.903512 |
Target: 5'- gGACGGGCGGAgcgaGUCUgaaccGGAGUg- -3' miRNA: 3'- aCUGCCUGCCUagg-CAGGa----CCUCGug -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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