miRNA display CGI


Results 1 - 20 of 250 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11101 5' -60.4 NC_002794.1 + 179124 0.66 0.828497
Target:  5'- cGGGCGCgCGG-UCGGUCGA--UCGUCUc -3'
miRNA:   3'- -CUUGCG-GCCgAGCCGGCUggAGCAGG- -5'
11101 5' -60.4 NC_002794.1 + 101489 0.66 0.828497
Target:  5'- aAACGCCGGCggcCGGuCCGAgCggugCGgcacacgCCg -3'
miRNA:   3'- cUUGCGGCCGa--GCC-GGCUgGa---GCa------GG- -5'
11101 5' -60.4 NC_002794.1 + 107252 0.66 0.828497
Target:  5'- cGGAC-CUGGCcCGGCgGAgCCgcgcCGUCCg -3'
miRNA:   3'- -CUUGcGGCCGaGCCGgCU-GGa---GCAGG- -5'
11101 5' -60.4 NC_002794.1 + 185580 0.66 0.828497
Target:  5'- aGGGCGCgCGGCUCucCCucCCUCuGUCCc -3'
miRNA:   3'- -CUUGCG-GCCGAGccGGcuGGAG-CAGG- -5'
11101 5' -60.4 NC_002794.1 + 155685 0.66 0.828497
Target:  5'- uGugGCagauCGGCUCGG-UGAUCgCGUCCa -3'
miRNA:   3'- cUugCG----GCCGAGCCgGCUGGaGCAGG- -5'
11101 5' -60.4 NC_002794.1 + 11361 0.66 0.828497
Target:  5'- -cGCGCUGaGCUUucggcaaaaGCCGGCCUCGaCCc -3'
miRNA:   3'- cuUGCGGC-CGAGc--------CGGCUGGAGCaGG- -5'
11101 5' -60.4 NC_002794.1 + 89571 0.66 0.828497
Target:  5'- cGAGCGucCCGGUgucaUCGGCCGucgaGCCgcgCGaUCCc -3'
miRNA:   3'- -CUUGC--GGCCG----AGCCGGC----UGGa--GC-AGG- -5'
11101 5' -60.4 NC_002794.1 + 14713 0.66 0.828497
Target:  5'- gGAGCGCugcucgcggcuuCGGCUCGGgguCCGGCg-CGUCa -3'
miRNA:   3'- -CUUGCG------------GCCGAGCC---GGCUGgaGCAGg -5'
11101 5' -60.4 NC_002794.1 + 133478 0.66 0.828497
Target:  5'- cGGGCGCgacucuUGGCUuucgCGG-CGACC-CGUCCg -3'
miRNA:   3'- -CUUGCG------GCCGA----GCCgGCUGGaGCAGG- -5'
11101 5' -60.4 NC_002794.1 + 65078 0.66 0.826106
Target:  5'- aAAC-CCGGCggCGGCUcgaugguccgaagaGACCUCGuggUCCg -3'
miRNA:   3'- cUUGcGGCCGa-GCCGG--------------CUGGAGC---AGG- -5'
11101 5' -60.4 NC_002794.1 + 39041 0.66 0.823702
Target:  5'- --uCGCCGGgaCGGCgGGCaccacgugaaccagUCGUCCc -3'
miRNA:   3'- cuuGCGGCCgaGCCGgCUGg-------------AGCAGG- -5'
11101 5' -60.4 NC_002794.1 + 99592 0.66 0.820474
Target:  5'- aGGGCGCggcggcggcgCGcGCUCGcGCCG-CCUCGgccCCg -3'
miRNA:   3'- -CUUGCG----------GC-CGAGC-CGGCuGGAGCa--GG- -5'
11101 5' -60.4 NC_002794.1 + 153358 0.66 0.820474
Target:  5'- aGGACGCggccCGGCUgcgcgcccucgUGGUCGAUCU-GUCCg -3'
miRNA:   3'- -CUUGCG----GCCGA-----------GCCGGCUGGAgCAGG- -5'
11101 5' -60.4 NC_002794.1 + 19460 0.66 0.820474
Target:  5'- cGAGCGgCGGCggCGGCgGgACC-CG-CCg -3'
miRNA:   3'- -CUUGCgGCCGa-GCCGgC-UGGaGCaGG- -5'
11101 5' -60.4 NC_002794.1 + 106038 0.66 0.820474
Target:  5'- --uCGCUGGaCgcgCGGCUGAaCUUCGUCa -3'
miRNA:   3'- cuuGCGGCC-Ga--GCCGGCU-GGAGCAGg -5'
11101 5' -60.4 NC_002794.1 + 189388 0.66 0.820474
Target:  5'- --cCGCUGuGCUCGGCC-ACgUaGUCCg -3'
miRNA:   3'- cuuGCGGC-CGAGCCGGcUGgAgCAGG- -5'
11101 5' -60.4 NC_002794.1 + 156212 0.66 0.820474
Target:  5'- gGAGgGCCGGCgacUCcGCCGGCggcuccgcgCUCGUCg -3'
miRNA:   3'- -CUUgCGGCCG---AGcCGGCUG---------GAGCAGg -5'
11101 5' -60.4 NC_002794.1 + 193800 0.66 0.820474
Target:  5'- cGACGCCGGCgccCGcucgucuggcGCCGACg-CGUCg -3'
miRNA:   3'- cUUGCGGCCGa--GC----------CGGCUGgaGCAGg -5'
11101 5' -60.4 NC_002794.1 + 146241 0.66 0.820474
Target:  5'- cGGCGUCGucaUCGucGUCGACCUCGUCg -3'
miRNA:   3'- cUUGCGGCcg-AGC--CGGCUGGAGCAGg -5'
11101 5' -60.4 NC_002794.1 + 17932 0.66 0.820474
Target:  5'- ---gGCCGGCUCc-CCGACCUgGcggCCa -3'
miRNA:   3'- cuugCGGCCGAGccGGCUGGAgCa--GG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.