miRNA display CGI


Results 41 - 60 of 250 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11101 5' -60.4 NC_002794.1 + 89571 0.66 0.828497
Target:  5'- cGAGCGucCCGGUgucaUCGGCCGucgaGCCgcgCGaUCCc -3'
miRNA:   3'- -CUUGC--GGCCG----AGCCGGC----UGGa--GC-AGG- -5'
11101 5' -60.4 NC_002794.1 + 14713 0.66 0.828497
Target:  5'- gGAGCGCugcucgcggcuuCGGCUCGGgguCCGGCg-CGUCa -3'
miRNA:   3'- -CUUGCG------------GCCGAGCC---GGCUGgaGCAGg -5'
11101 5' -60.4 NC_002794.1 + 133478 0.66 0.828497
Target:  5'- cGGGCGCgacucuUGGCUuucgCGG-CGACC-CGUCCg -3'
miRNA:   3'- -CUUGCG------GCCGA----GCCgGCUGGaGCAGG- -5'
11101 5' -60.4 NC_002794.1 + 179124 0.66 0.828497
Target:  5'- cGGGCGCgCGG-UCGGUCGA--UCGUCUc -3'
miRNA:   3'- -CUUGCG-GCCgAGCCGGCUggAGCAGG- -5'
11101 5' -60.4 NC_002794.1 + 156212 0.66 0.820474
Target:  5'- gGAGgGCCGGCgacUCcGCCGGCggcuccgcgCUCGUCg -3'
miRNA:   3'- -CUUgCGGCCG---AGcCGGCUG---------GAGCAGg -5'
11101 5' -60.4 NC_002794.1 + 189388 0.66 0.820474
Target:  5'- --cCGCUGuGCUCGGCC-ACgUaGUCCg -3'
miRNA:   3'- cuuGCGGC-CGAGCCGGcUGgAgCAGG- -5'
11101 5' -60.4 NC_002794.1 + 106038 0.66 0.820474
Target:  5'- --uCGCUGGaCgcgCGGCUGAaCUUCGUCa -3'
miRNA:   3'- cuuGCGGCC-Ga--GCCGGCU-GGAGCAGg -5'
11101 5' -60.4 NC_002794.1 + 50730 0.66 0.812298
Target:  5'- --cCGcCCGGggCGGCCG-CCucgacucgcUCGUCCg -3'
miRNA:   3'- cuuGC-GGCCgaGCCGGCuGG---------AGCAGG- -5'
11101 5' -60.4 NC_002794.1 + 138415 0.66 0.812298
Target:  5'- --uCGCCGGC-C-GCCGA-CUCGUCg -3'
miRNA:   3'- cuuGCGGCCGaGcCGGCUgGAGCAGg -5'
11101 5' -60.4 NC_002794.1 + 137389 0.66 0.812298
Target:  5'- cGACGCgGGUcCGGuCUGuCCggCGUCCg -3'
miRNA:   3'- cUUGCGgCCGaGCC-GGCuGGa-GCAGG- -5'
11101 5' -60.4 NC_002794.1 + 134293 0.66 0.812298
Target:  5'- cGAGCGCCucuucgaUCGGCUGugucGCCUCGcgCCg -3'
miRNA:   3'- -CUUGCGGccg----AGCCGGC----UGGAGCa-GG- -5'
11101 5' -60.4 NC_002794.1 + 52790 0.66 0.812298
Target:  5'- uGACGCuCGagccGCUCGucggacGCCGGCagCUCGUCCu -3'
miRNA:   3'- cUUGCG-GC----CGAGC------CGGCUG--GAGCAGG- -5'
11101 5' -60.4 NC_002794.1 + 188771 0.66 0.812298
Target:  5'- gGAACaGcCCGGUgcagcgguagCGGCCGGCCcCG-CCg -3'
miRNA:   3'- -CUUG-C-GGCCGa---------GCCGGCUGGaGCaGG- -5'
11101 5' -60.4 NC_002794.1 + 54861 0.66 0.820474
Target:  5'- ---gGCCGGCgcgGGCCG-CCgcagCGUCg -3'
miRNA:   3'- cuugCGGCCGag-CCGGCuGGa---GCAGg -5'
11101 5' -60.4 NC_002794.1 + 36375 0.66 0.820474
Target:  5'- -cGCGCCcgcGGCgaagCGGUCGACCcagaaaUCGaCCg -3'
miRNA:   3'- cuUGCGG---CCGa---GCCGGCUGG------AGCaGG- -5'
11101 5' -60.4 NC_002794.1 + 17932 0.66 0.820474
Target:  5'- ---gGCCGGCUCc-CCGACCUgGcggCCa -3'
miRNA:   3'- cuugCGGCCGAGccGGCUGGAgCa--GG- -5'
11101 5' -60.4 NC_002794.1 + 65233 0.66 0.819663
Target:  5'- cGGGCGgCGGUcgccgCGGCggcgaucCGGCCUCG-CCg -3'
miRNA:   3'- -CUUGCgGCCGa----GCCG-------GCUGGAGCaGG- -5'
11101 5' -60.4 NC_002794.1 + 19460 0.66 0.820474
Target:  5'- cGAGCGgCGGCggCGGCgGgACC-CG-CCg -3'
miRNA:   3'- -CUUGCgGCCGa-GCCGgC-UGGaGCaGG- -5'
11101 5' -60.4 NC_002794.1 + 153358 0.66 0.820474
Target:  5'- aGGACGCggccCGGCUgcgcgcccucgUGGUCGAUCU-GUCCg -3'
miRNA:   3'- -CUUGCG----GCCGA-----------GCCGGCUGGAgCAGG- -5'
11101 5' -60.4 NC_002794.1 + 99592 0.66 0.820474
Target:  5'- aGGGCGCggcggcggcgCGcGCUCGcGCCG-CCUCGgccCCg -3'
miRNA:   3'- -CUUGCG----------GC-CGAGC-CGGCuGGAGCa--GG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.