Results 61 - 80 of 250 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
11101 | 5' | -60.4 | NC_002794.1 | + | 17932 | 0.66 | 0.820474 |
Target: 5'- ---gGCCGGCUCc-CCGACCUgGcggCCa -3' miRNA: 3'- cuugCGGCCGAGccGGCUGGAgCa--GG- -5' |
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11101 | 5' | -60.4 | NC_002794.1 | + | 36375 | 0.66 | 0.820474 |
Target: 5'- -cGCGCCcgcGGCgaagCGGUCGACCcagaaaUCGaCCg -3' miRNA: 3'- cuUGCGG---CCGa---GCCGGCUGG------AGCaGG- -5' |
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11101 | 5' | -60.4 | NC_002794.1 | + | 54861 | 0.66 | 0.820474 |
Target: 5'- ---gGCCGGCgcgGGCCG-CCgcagCGUCg -3' miRNA: 3'- cuugCGGCCGag-CCGGCuGGa---GCAGg -5' |
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11101 | 5' | -60.4 | NC_002794.1 | + | 12199 | 0.67 | 0.769377 |
Target: 5'- cGGGCGCC-GCUCGgacguGCCGGCggCGUCg -3' miRNA: 3'- -CUUGCGGcCGAGC-----CGGCUGgaGCAGg -5' |
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11101 | 5' | -60.4 | NC_002794.1 | + | 63709 | 0.67 | 0.778209 |
Target: 5'- cGGCGCCGGCgccGCCGgACCgcCGaUCCa -3' miRNA: 3'- cUUGCGGCCGagcCGGC-UGGa-GC-AGG- -5' |
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11101 | 5' | -60.4 | NC_002794.1 | + | 45473 | 0.67 | 0.778209 |
Target: 5'- aGggUcCCGaGCUCGGCCu-CCgcCGUCCa -3' miRNA: 3'- -CuuGcGGC-CGAGCCGGcuGGa-GCAGG- -5' |
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11101 | 5' | -60.4 | NC_002794.1 | + | 129235 | 0.67 | 0.777331 |
Target: 5'- cGAACgGgCGGCUcCGGCgGacucgggucgagcGCCUCGUCg -3' miRNA: 3'- -CUUG-CgGCCGA-GCCGgC-------------UGGAGCAGg -5' |
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11101 | 5' | -60.4 | NC_002794.1 | + | 116802 | 0.67 | 0.775571 |
Target: 5'- ---aGCCGGCUCGGgCGccguagcgcgggucGCuCUgGUCCc -3' miRNA: 3'- cuugCGGCCGAGCCgGC--------------UG-GAgCAGG- -5' |
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11101 | 5' | -60.4 | NC_002794.1 | + | 44260 | 0.67 | 0.765813 |
Target: 5'- ---gGgCGGCUCGGCCG-CCggggacggaggaGUCCg -3' miRNA: 3'- cuugCgGCCGAGCCGGCuGGag----------CAGG- -5' |
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11101 | 5' | -60.4 | NC_002794.1 | + | 62633 | 0.67 | 0.766706 |
Target: 5'- uGGGCGUCGGaccccgucgcccgcCUCGGCaaa-CUCGUCCu -3' miRNA: 3'- -CUUGCGGCC--------------GAGCCGgcugGAGCAGG- -5' |
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11101 | 5' | -60.4 | NC_002794.1 | + | 91607 | 0.67 | 0.778209 |
Target: 5'- -uGCGCgCGGC-CGagggccacGCCGACCUCcugcgccgccuGUCCg -3' miRNA: 3'- cuUGCG-GCCGaGC--------CGGCUGGAG-----------CAGG- -5' |
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11101 | 5' | -60.4 | NC_002794.1 | + | 44644 | 0.67 | 0.778209 |
Target: 5'- --cCGCCGcaggauGUUCGGUCGACagguccgCGUCCg -3' miRNA: 3'- cuuGCGGC------CGAGCCGGCUGga-----GCAGG- -5' |
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11101 | 5' | -60.4 | NC_002794.1 | + | 61828 | 0.67 | 0.778209 |
Target: 5'- --cCGCCGGC--GGCCGGCgUCacUCCg -3' miRNA: 3'- cuuGCGGCCGagCCGGCUGgAGc-AGG- -5' |
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11101 | 5' | -60.4 | NC_002794.1 | + | 86608 | 0.67 | 0.778209 |
Target: 5'- cGGAUGCucCGGCUCGaGcCCGACCggaUGcUCCg -3' miRNA: 3'- -CUUGCG--GCCGAGC-C-GGCUGGa--GC-AGG- -5' |
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11101 | 5' | -60.4 | NC_002794.1 | + | 86440 | 0.67 | 0.778209 |
Target: 5'- cGGAUGCucCGGCUCGaGcCCGACCggaUGcUCCg -3' miRNA: 3'- -CUUGCG--GCCGAGC-C-GGCUGGa--GC-AGG- -5' |
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11101 | 5' | -60.4 | NC_002794.1 | + | 86248 | 0.67 | 0.778209 |
Target: 5'- cGGAUGCucCGGCUCGaGcCCGACCggaUGcUCCg -3' miRNA: 3'- -CUUGCG--GCCGAGC-C-GGCUGGa--GC-AGG- -5' |
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11101 | 5' | -60.4 | NC_002794.1 | + | 69066 | 0.67 | 0.778209 |
Target: 5'- cGGGcCGCC-GC-CGGCCGcCCUCcUCCg -3' miRNA: 3'- -CUU-GCGGcCGaGCCGGCuGGAGcAGG- -5' |
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11101 | 5' | -60.4 | NC_002794.1 | + | 93076 | 0.67 | 0.778209 |
Target: 5'- cGAGCGCCuGUUCccgGGCugCGGCCUC-UCCu -3' miRNA: 3'- -CUUGCGGcCGAG---CCG--GCUGGAGcAGG- -5' |
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11101 | 5' | -60.4 | NC_002794.1 | + | 186032 | 0.67 | 0.778209 |
Target: 5'- cGGAC-CCgGGCccCGGCUGGCCgUCGUUCc -3' miRNA: 3'- -CUUGcGG-CCGa-GCCGGCUGG-AGCAGG- -5' |
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11101 | 5' | -60.4 | NC_002794.1 | + | 74016 | 0.67 | 0.769377 |
Target: 5'- -uGCGCCuGUUCGGCCGccACCcCGgCCc -3' miRNA: 3'- cuUGCGGcCGAGCCGGC--UGGaGCaGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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