miRNA display CGI


Results 1 - 20 of 250 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11101 5' -60.4 NC_002794.1 + 99812 0.82 0.11674
Target:  5'- cGGGCGCCGGCgccgUCGGCCGACCugcUCuUCCa -3'
miRNA:   3'- -CUUGCGGCCG----AGCCGGCUGG---AGcAGG- -5'
11101 5' -60.4 NC_002794.1 + 108589 0.8 0.17221
Target:  5'- cGAACGCuaucgCGGCgCGGCCGACCUgGUCg -3'
miRNA:   3'- -CUUGCG-----GCCGaGCCGGCUGGAgCAGg -5'
11101 5' -60.4 NC_002794.1 + 110373 0.8 0.160268
Target:  5'- --uCGUCGGCucUCGGCCGcuCCUCGUCCg -3'
miRNA:   3'- cuuGCGGCCG--AGCCGGCu-GGAGCAGG- -5'
11101 5' -60.4 NC_002794.1 + 76832 0.8 0.152726
Target:  5'- cAGCgGCCGGCgaugCGcGCCGGCCUCGUCg -3'
miRNA:   3'- cUUG-CGGCCGa---GC-CGGCUGGAGCAGg -5'
11101 5' -60.4 NC_002794.1 + 19525 0.79 0.184941
Target:  5'- gGAGCGCCGGCgCGGCgCGGCC-CG-CCg -3'
miRNA:   3'- -CUUGCGGCCGaGCCG-GCUGGaGCaGG- -5'
11101 5' -60.4 NC_002794.1 + 37762 0.79 0.198496
Target:  5'- cGGCGCCGGCgggagCGGCCGuCgUCGUCg -3'
miRNA:   3'- cUUGCGGCCGa----GCCGGCuGgAGCAGg -5'
11101 5' -60.4 NC_002794.1 + 82077 0.78 0.223008
Target:  5'- --uCGCCGGCccucUCGGgcaccCCGACCUCGUCUg -3'
miRNA:   3'- cuuGCGGCCG----AGCC-----GGCUGGAGCAGG- -5'
11101 5' -60.4 NC_002794.1 + 182945 0.78 0.212908
Target:  5'- cGGCGCCgGGCUCGaGCCGAcggcggccggcuCCUCGUUCg -3'
miRNA:   3'- cUUGCGG-CCGAGC-CGGCU------------GGAGCAGG- -5'
11101 5' -60.4 NC_002794.1 + 102474 0.77 0.261601
Target:  5'- -cGCGUCGGCgugcCGGCCGGCUUccaCGUCCu -3'
miRNA:   3'- cuUGCGGCCGa---GCCGGCUGGA---GCAGG- -5'
11101 5' -60.4 NC_002794.1 + 60131 0.77 0.255771
Target:  5'- -cACGCCGGUcaCGGCCGACCUCagcuacuUCCa -3'
miRNA:   3'- cuUGCGGCCGa-GCCGGCUGGAGc------AGG- -5'
11101 5' -60.4 NC_002794.1 + 93998 0.77 0.250049
Target:  5'- cGGACGCCGGCgccggCGGCgGGCCggCGgguUCCg -3'
miRNA:   3'- -CUUGCGGCCGa----GCCGgCUGGa-GC---AGG- -5'
11101 5' -60.4 NC_002794.1 + 78074 0.76 0.298862
Target:  5'- cGAACGCCGGC-C-GCCGcCCUCGccUCCg -3'
miRNA:   3'- -CUUGCGGCCGaGcCGGCuGGAGC--AGG- -5'
11101 5' -60.4 NC_002794.1 + 182796 0.76 0.298862
Target:  5'- cAGCGCaCGGUcgCGGUCGACagCUCGUCCa -3'
miRNA:   3'- cUUGCG-GCCGa-GCCGGCUG--GAGCAGG- -5'
11101 5' -60.4 NC_002794.1 + 128158 0.76 0.296904
Target:  5'- cGACGgCGGCUCGcGCCGcggacgggucggugACCUCGUCg -3'
miRNA:   3'- cUUGCgGCCGAGC-CGGC--------------UGGAGCAGg -5'
11101 5' -60.4 NC_002794.1 + 71396 0.76 0.273584
Target:  5'- -cACGgucugCGGCUCGGgCCGGCCgUCGUCCa -3'
miRNA:   3'- cuUGCg----GCCGAGCC-GGCUGG-AGCAGG- -5'
11101 5' -60.4 NC_002794.1 + 118639 0.76 0.273584
Target:  5'- -uGCGCCaGCUCGG-CGGCCagcUCGUCCg -3'
miRNA:   3'- cuUGCGGcCGAGCCgGCUGG---AGCAGG- -5'
11101 5' -60.4 NC_002794.1 + 100329 0.76 0.292377
Target:  5'- ---gGCCGGCgcaCGGCCGGCuCUCGaCCg -3'
miRNA:   3'- cuugCGGCCGa--GCCGGCUG-GAGCaGG- -5'
11101 5' -60.4 NC_002794.1 + 101563 0.76 0.298862
Target:  5'- cGAACGCCGGCgggaGuGCCGGCCgccgCGgCCg -3'
miRNA:   3'- -CUUGCGGCCGag--C-CGGCUGGa---GCaGG- -5'
11101 5' -60.4 NC_002794.1 + 68866 0.75 0.347364
Target:  5'- gGAGCuCgGGCUC-GCCGGCCUCGcCCg -3'
miRNA:   3'- -CUUGcGgCCGAGcCGGCUGGAGCaGG- -5'
11101 5' -60.4 NC_002794.1 + 116889 0.75 0.312164
Target:  5'- gGGGCGCCGGCgccgucuccggCGGCCGGuCCggCGUCg -3'
miRNA:   3'- -CUUGCGGCCGa----------GCCGGCU-GGa-GCAGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.