miRNA display CGI


Results 41 - 60 of 250 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11101 5' -60.4 NC_002794.1 + 49014 0.72 0.495787
Target:  5'- -cGCGCC-GCggCGGCCGcgGCgUCGUCCg -3'
miRNA:   3'- cuUGCGGcCGa-GCCGGC--UGgAGCAGG- -5'
11101 5' -60.4 NC_002794.1 + 44175 0.72 0.490358
Target:  5'- cGAGCGgCGGCUCGucgacuccgggcgaaGCCgGGCCgaCGUCCg -3'
miRNA:   3'- -CUUGCgGCCGAGC---------------CGG-CUGGa-GCAGG- -5'
11101 5' -60.4 NC_002794.1 + 191670 0.72 0.486754
Target:  5'- cGGCGCCGGCagcggCGGCgGcgugcCCUCGUCg -3'
miRNA:   3'- cUUGCGGCCGa----GCCGgCu----GGAGCAGg -5'
11101 5' -60.4 NC_002794.1 + 82044 0.72 0.460141
Target:  5'- uGGGCGgCGGCggCGG-CGGCgUCGUCCu -3'
miRNA:   3'- -CUUGCgGCCGa-GCCgGCUGgAGCAGG- -5'
11101 5' -60.4 NC_002794.1 + 82221 0.72 0.460141
Target:  5'- -uGCGCuCGaGCcCGGCCGACC-CGUCa -3'
miRNA:   3'- cuUGCG-GC-CGaGCCGGCUGGaGCAGg -5'
11101 5' -60.4 NC_002794.1 + 107187 0.72 0.451442
Target:  5'- ---aGCCGGCgccgccgCcGCCGGCCUCGcCCg -3'
miRNA:   3'- cuugCGGCCGa------GcCGGCUGGAGCaGG- -5'
11101 5' -60.4 NC_002794.1 + 75380 0.72 0.499421
Target:  5'- ---gGCCGGCggcggCGGCCucuccccgucccuCCUCGUCCg -3'
miRNA:   3'- cuugCGGCCGa----GCCGGcu-----------GGAGCAGG- -5'
11101 5' -60.4 NC_002794.1 + 106266 0.72 0.495787
Target:  5'- cGAGCGCCGcGCgUCGcGCCG-CCUCGg-- -3'
miRNA:   3'- -CUUGCGGC-CG-AGC-CGGCuGGAGCagg -5'
11101 5' -60.4 NC_002794.1 + 53868 0.71 0.532629
Target:  5'- cGACGaCGGuCUCGGCgGAcuCCUCGUCg -3'
miRNA:   3'- cUUGCgGCC-GAGCCGgCU--GGAGCAGg -5'
11101 5' -60.4 NC_002794.1 + 154208 0.71 0.541998
Target:  5'- aGACGCUGGCgCGGCaaggcgugGACCUCGaguacuUCCa -3'
miRNA:   3'- cUUGCGGCCGaGCCGg-------CUGGAGC------AGG- -5'
11101 5' -60.4 NC_002794.1 + 148432 0.71 0.55142
Target:  5'- -cACGCCGGCUCcuGGCUGGCgCUCuacuggccUCCg -3'
miRNA:   3'- cuUGCGGCCGAG--CCGGCUG-GAGc-------AGG- -5'
11101 5' -60.4 NC_002794.1 + 181539 0.71 0.55142
Target:  5'- --cCGCCGGCg-GGCCGGCgcuCUCGgucgCCg -3'
miRNA:   3'- cuuGCGGCCGagCCGGCUG---GAGCa---GG- -5'
11101 5' -60.4 NC_002794.1 + 176605 0.71 0.55142
Target:  5'- aGAGCgGCCGGCaCGGCCauCCUCGUg- -3'
miRNA:   3'- -CUUG-CGGCCGaGCCGGcuGGAGCAgg -5'
11101 5' -60.4 NC_002794.1 + 102870 0.71 0.550476
Target:  5'- -uGCGCCGGgaucgguUUCuGGCCGACCUgGUgCCc -3'
miRNA:   3'- cuUGCGGCC-------GAG-CCGGCUGGAgCA-GG- -5'
11101 5' -60.4 NC_002794.1 + 187765 0.71 0.532629
Target:  5'- --cCGCCGGCgcCGGUCG-CCUCGaCCc -3'
miRNA:   3'- cuuGCGGCCGa-GCCGGCuGGAGCaGG- -5'
11101 5' -60.4 NC_002794.1 + 89935 0.71 0.541998
Target:  5'- cGGGCGCCGGCUUcucggGaGCCGACgUCGa-- -3'
miRNA:   3'- -CUUGCGGCCGAG-----C-CGGCUGgAGCagg -5'
11101 5' -60.4 NC_002794.1 + 156398 0.71 0.514073
Target:  5'- aGAGCgGCCGGCgccgCGGCCGcgGCCaCGgCCg -3'
miRNA:   3'- -CUUG-CGGCCGa---GCCGGC--UGGaGCaGG- -5'
11101 5' -60.4 NC_002794.1 + 29086 0.71 0.504894
Target:  5'- uGACGUgCGGCUCGGCuCGuCgUCGUCa -3'
miRNA:   3'- cUUGCG-GCCGAGCCG-GCuGgAGCAGg -5'
11101 5' -60.4 NC_002794.1 + 177578 0.71 0.532629
Target:  5'- cGACGCCgugacucgaaGGCUCGGCgGAgCCUCGggUCg -3'
miRNA:   3'- cUUGCGG----------CCGAGCCGgCU-GGAGCa-GG- -5'
11101 5' -60.4 NC_002794.1 + 143713 0.71 0.532629
Target:  5'- --cCGCgGGCccCGGCgGGCgUCGUCCu -3'
miRNA:   3'- cuuGCGgCCGa-GCCGgCUGgAGCAGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.