miRNA display CGI


Results 21 - 40 of 250 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11101 5' -60.4 NC_002794.1 + 121481 0.74 0.357715
Target:  5'- cGAcCGCCGGUUCGGaCgCGGCCUccgccggggcgacgaCGUCCg -3'
miRNA:   3'- -CUuGCGGCCGAGCC-G-GCUGGA---------------GCAGG- -5'
11101 5' -60.4 NC_002794.1 + 56917 0.74 0.377506
Target:  5'- cGGGCGCCGGg-CuGCCGGCCUCGcaCCa -3'
miRNA:   3'- -CUUGCGGCCgaGcCGGCUGGAGCa-GG- -5'
11101 5' -60.4 NC_002794.1 + 14252 0.74 0.385312
Target:  5'- aGAcCGCCGGCUCGaccCCGACCgaggUGUUCg -3'
miRNA:   3'- -CUuGCGGCCGAGCc--GGCUGGa---GCAGG- -5'
11101 5' -60.4 NC_002794.1 + 137147 0.74 0.393223
Target:  5'- --cCGcCCGGC-CGGCCGcCCUCgGUCCc -3'
miRNA:   3'- cuuGC-GGCCGaGCCGGCuGGAG-CAGG- -5'
11101 5' -60.4 NC_002794.1 + 185762 0.73 0.40124
Target:  5'- --cCGCCGGCgCGGCCG-CC-CGUCa -3'
miRNA:   3'- cuuGCGGCCGaGCCGGCuGGaGCAGg -5'
11101 5' -60.4 NC_002794.1 + 71755 0.73 0.40124
Target:  5'- --cCGCCGGCUCuuCCGACCg-GUCCg -3'
miRNA:   3'- cuuGCGGCCGAGccGGCUGGagCAGG- -5'
11101 5' -60.4 NC_002794.1 + 85464 0.73 0.41758
Target:  5'- cAugGCCGGCgccCGGCCuccGGCCugUCGUCUg -3'
miRNA:   3'- cUugCGGCCGa--GCCGG---CUGG--AGCAGG- -5'
11101 5' -60.4 NC_002794.1 + 119516 0.73 0.43432
Target:  5'- cGGCGCgGaGC-CGGCCGcggaccCCUCGUCCg -3'
miRNA:   3'- cUUGCGgC-CGaGCCGGCu-----GGAGCAGG- -5'
11101 5' -60.4 NC_002794.1 + 32778 0.73 0.442835
Target:  5'- cGAACGCCGGUucgucaucccggUCGGUcuucgccgCGACCgUCGUCUu -3'
miRNA:   3'- -CUUGCGGCCG------------AGCCG--------GCUGG-AGCAGG- -5'
11101 5' -60.4 NC_002794.1 + 184773 0.73 0.442835
Target:  5'- cAGCGCCGGCUCGcucGUCGACaC-CGUCa -3'
miRNA:   3'- cUUGCGGCCGAGC---CGGCUG-GaGCAGg -5'
11101 5' -60.4 NC_002794.1 + 47960 0.73 0.442835
Target:  5'- cGGCGCCGGCUgGG-CGACCgccgcgCGcUCCu -3'
miRNA:   3'- cUUGCGGCCGAgCCgGCUGGa-----GC-AGG- -5'
11101 5' -60.4 NC_002794.1 + 112256 0.73 0.442835
Target:  5'- --cCGCCGGCg-GGaCCGGCguCUCGUCCu -3'
miRNA:   3'- cuuGCGGCCGagCC-GGCUG--GAGCAGG- -5'
11101 5' -60.4 NC_002794.1 + 18805 0.72 0.450578
Target:  5'- --cCGCCGGCcaacgggUCGG-CGACCUCGgCCg -3'
miRNA:   3'- cuuGCGGCCG-------AGCCgGCUGGAGCaGG- -5'
11101 5' -60.4 NC_002794.1 + 38568 0.72 0.451442
Target:  5'- --cCGCCGGCgccucgacggagUCGGCCG-CCUCcUCCc -3'
miRNA:   3'- cuuGCGGCCG------------AGCCGGCuGGAGcAGG- -5'
11101 5' -60.4 NC_002794.1 + 107187 0.72 0.451442
Target:  5'- ---aGCCGGCgccgccgCcGCCGGCCUCGcCCg -3'
miRNA:   3'- cuugCGGCCGa------GcCGGCUGGAGCaGG- -5'
11101 5' -60.4 NC_002794.1 + 142800 0.72 0.460141
Target:  5'- ---aGCCGcaGUUCGGCCGggucgGCCUCGUUCa -3'
miRNA:   3'- cuugCGGC--CGAGCCGGC-----UGGAGCAGG- -5'
11101 5' -60.4 NC_002794.1 + 115585 0.72 0.460141
Target:  5'- gGGACGUagCGGCUgCGGUCGACCcgcUCGcCCg -3'
miRNA:   3'- -CUUGCG--GCCGA-GCCGGCUGG---AGCaGG- -5'
11101 5' -60.4 NC_002794.1 + 82044 0.72 0.460141
Target:  5'- uGGGCGgCGGCggCGG-CGGCgUCGUCCu -3'
miRNA:   3'- -CUUGCgGCCGa-GCCgGCUGgAGCAGG- -5'
11101 5' -60.4 NC_002794.1 + 82221 0.72 0.460141
Target:  5'- -uGCGCuCGaGCcCGGCCGACC-CGUCa -3'
miRNA:   3'- cuUGCG-GC-CGaGCCGGCUGGaGCAGg -5'
11101 5' -60.4 NC_002794.1 + 69025 0.72 0.468928
Target:  5'- cGACGCCGGCgcccucgcCGGCUu-CCUCGcUCCg -3'
miRNA:   3'- cUUGCGGCCGa-------GCCGGcuGGAGC-AGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.