miRNA display CGI


Results 41 - 60 of 250 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11101 5' -60.4 NC_002794.1 + 60855 0.72 0.486754
Target:  5'- --cCGCCGGCgaccUCGGCCGGCUcucaaguacaUCGgcgCCg -3'
miRNA:   3'- cuuGCGGCCG----AGCCGGCUGG----------AGCa--GG- -5'
11101 5' -60.4 NC_002794.1 + 192474 0.72 0.486754
Target:  5'- cAGCGCCGaGCccUCGuCCG-CCUCGUCCc -3'
miRNA:   3'- cUUGCGGC-CG--AGCcGGCuGGAGCAGG- -5'
11101 5' -60.4 NC_002794.1 + 191670 0.72 0.486754
Target:  5'- cGGCGCCGGCagcggCGGCgGcgugcCCUCGUCg -3'
miRNA:   3'- cUUGCGGCCGa----GCCGgCu----GGAGCAGg -5'
11101 5' -60.4 NC_002794.1 + 44175 0.72 0.490358
Target:  5'- cGAGCGgCGGCUCGucgacuccgggcgaaGCCgGGCCgaCGUCCg -3'
miRNA:   3'- -CUUGCgGCCGAGC---------------CGG-CUGGa-GCAGG- -5'
11101 5' -60.4 NC_002794.1 + 49014 0.72 0.495787
Target:  5'- -cGCGCC-GCggCGGCCGcgGCgUCGUCCg -3'
miRNA:   3'- cuUGCGGcCGa-GCCGGC--UGgAGCAGG- -5'
11101 5' -60.4 NC_002794.1 + 92867 0.72 0.495787
Target:  5'- -uACGCCGcCUCgGGCCGGCa-CGUCCu -3'
miRNA:   3'- cuUGCGGCcGAG-CCGGCUGgaGCAGG- -5'
11101 5' -60.4 NC_002794.1 + 106266 0.72 0.495787
Target:  5'- cGAGCGCCGcGCgUCGcGCCG-CCUCGg-- -3'
miRNA:   3'- -CUUGCGGC-CG-AGC-CGGCuGGAGCagg -5'
11101 5' -60.4 NC_002794.1 + 75380 0.72 0.499421
Target:  5'- ---gGCCGGCggcggCGGCCucuccccgucccuCCUCGUCCg -3'
miRNA:   3'- cuugCGGCCGa----GCCGGcu-----------GGAGCAGG- -5'
11101 5' -60.4 NC_002794.1 + 150609 0.71 0.504894
Target:  5'- cGGGCGCCGGCUCuGCgGGagCUCGUgagCCa -3'
miRNA:   3'- -CUUGCGGCCGAGcCGgCUg-GAGCA---GG- -5'
11101 5' -60.4 NC_002794.1 + 29086 0.71 0.504894
Target:  5'- uGACGUgCGGCUCGGCuCGuCgUCGUCa -3'
miRNA:   3'- cUUGCG-GCCGAGCCG-GCuGgAGCAGg -5'
11101 5' -60.4 NC_002794.1 + 30562 0.71 0.513153
Target:  5'- -cGCGCCcGCUCGuucgucaGCgugaCGACCUCGUCCu -3'
miRNA:   3'- cuUGCGGcCGAGC-------CG----GCUGGAGCAGG- -5'
11101 5' -60.4 NC_002794.1 + 104 0.71 0.514073
Target:  5'- cGAACGCCGGC-CGaccgcacgaaacGCCGACCggaGcCCg -3'
miRNA:   3'- -CUUGCGGCCGaGC------------CGGCUGGag-CaGG- -5'
11101 5' -60.4 NC_002794.1 + 156398 0.71 0.514073
Target:  5'- aGAGCgGCCGGCgccgCGGCCGcgGCCaCGgCCg -3'
miRNA:   3'- -CUUG-CGGCCGa---GCCGGC--UGGaGCaGG- -5'
11101 5' -60.4 NC_002794.1 + 75284 0.71 0.514073
Target:  5'- -cAC-CCGGC-CGGCCGgcGCCUCG-CCa -3'
miRNA:   3'- cuUGcGGCCGaGCCGGC--UGGAGCaGG- -5'
11101 5' -60.4 NC_002794.1 + 71807 0.71 0.514073
Target:  5'- cGGGCG-CGGCgaGGCCG-CCUCGUCg -3'
miRNA:   3'- -CUUGCgGCCGagCCGGCuGGAGCAGg -5'
11101 5' -60.4 NC_002794.1 + 10952 0.71 0.52332
Target:  5'- gGAAC-CCGGaggGGCCGGCCgagaCGUCCg -3'
miRNA:   3'- -CUUGcGGCCgagCCGGCUGGa---GCAGG- -5'
11101 5' -60.4 NC_002794.1 + 113289 0.71 0.52332
Target:  5'- -cGCGUCuGCUCGGCgCaGCgCUCGUCCg -3'
miRNA:   3'- cuUGCGGcCGAGCCG-GcUG-GAGCAGG- -5'
11101 5' -60.4 NC_002794.1 + 76957 0.71 0.52332
Target:  5'- aGACGCCguccGGC-CGGCCcgccgagcucGACCUgGUCCu -3'
miRNA:   3'- cUUGCGG----CCGaGCCGG----------CUGGAgCAGG- -5'
11101 5' -60.4 NC_002794.1 + 53868 0.71 0.532629
Target:  5'- cGACGaCGGuCUCGGCgGAcuCCUCGUCg -3'
miRNA:   3'- cUUGCgGCC-GAGCCGgCU--GGAGCAGg -5'
11101 5' -60.4 NC_002794.1 + 187765 0.71 0.532629
Target:  5'- --cCGCCGGCgcCGGUCG-CCUCGaCCc -3'
miRNA:   3'- cuuGCGGCCGa-GCCGGCuGGAGCaGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.