miRNA display CGI


Results 61 - 80 of 250 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11101 5' -60.4 NC_002794.1 + 187765 0.71 0.532629
Target:  5'- --cCGCCGGCgcCGGUCG-CCUCGaCCc -3'
miRNA:   3'- cuuGCGGCCGa-GCCGGCuGGAGCaGG- -5'
11101 5' -60.4 NC_002794.1 + 129943 0.71 0.532629
Target:  5'- cGGCGgCGGCggCGGCUcuggaGACCUCgGUCCc -3'
miRNA:   3'- cUUGCgGCCGa-GCCGG-----CUGGAG-CAGG- -5'
11101 5' -60.4 NC_002794.1 + 53868 0.71 0.532629
Target:  5'- cGACGaCGGuCUCGGCgGAcuCCUCGUCg -3'
miRNA:   3'- cUUGCgGCC-GAGCCGgCU--GGAGCAGg -5'
11101 5' -60.4 NC_002794.1 + 154208 0.71 0.541998
Target:  5'- aGACGCUGGCgCGGCaaggcgugGACCUCGaguacuUCCa -3'
miRNA:   3'- cUUGCGGCCGaGCCGg-------CUGGAGC------AGG- -5'
11101 5' -60.4 NC_002794.1 + 89935 0.71 0.541998
Target:  5'- cGGGCGCCGGCUUcucggGaGCCGACgUCGa-- -3'
miRNA:   3'- -CUUGCGGCCGAG-----C-CGGCUGgAGCagg -5'
11101 5' -60.4 NC_002794.1 + 102870 0.71 0.550476
Target:  5'- -uGCGCCGGgaucgguUUCuGGCCGACCUgGUgCCc -3'
miRNA:   3'- cuUGCGGCC-------GAG-CCGGCUGGAgCA-GG- -5'
11101 5' -60.4 NC_002794.1 + 181539 0.71 0.55142
Target:  5'- --cCGCCGGCg-GGCCGGCgcuCUCGgucgCCg -3'
miRNA:   3'- cuuGCGGCCGagCCGGCUG---GAGCa---GG- -5'
11101 5' -60.4 NC_002794.1 + 13579 0.71 0.55142
Target:  5'- --cUGUCGGUcaaCGGCaCGACCgUCGUCCg -3'
miRNA:   3'- cuuGCGGCCGa--GCCG-GCUGG-AGCAGG- -5'
11101 5' -60.4 NC_002794.1 + 176605 0.71 0.55142
Target:  5'- aGAGCgGCCGGCaCGGCCauCCUCGUg- -3'
miRNA:   3'- -CUUG-CGGCCGaGCCGGcuGGAGCAgg -5'
11101 5' -60.4 NC_002794.1 + 148432 0.71 0.55142
Target:  5'- -cACGCCGGCUCcuGGCUGGCgCUCuacuggccUCCg -3'
miRNA:   3'- cuUGCGGCCGAG--CCGGCUG-GAGc-------AGG- -5'
11101 5' -60.4 NC_002794.1 + 80439 0.7 0.560892
Target:  5'- --cCGCCGGCggCcGCCGGCC-CGUCg -3'
miRNA:   3'- cuuGCGGCCGa-GcCGGCUGGaGCAGg -5'
11101 5' -60.4 NC_002794.1 + 180887 0.7 0.560892
Target:  5'- -cGCGcCCGGuCUCGGCCGcggaCUCGgCCg -3'
miRNA:   3'- cuUGC-GGCC-GAGCCGGCug--GAGCaGG- -5'
11101 5' -60.4 NC_002794.1 + 21925 0.7 0.560892
Target:  5'- aGACGaCGGCggCGGCgCGGCgCUCGUCg -3'
miRNA:   3'- cUUGCgGCCGa-GCCG-GCUG-GAGCAGg -5'
11101 5' -60.4 NC_002794.1 + 195584 0.7 0.566596
Target:  5'- cGAcCGCCGGaC-CGGCCGACgCgcccccgcgcuggCGUCCg -3'
miRNA:   3'- -CUuGCGGCC-GaGCCGGCUG-Ga------------GCAGG- -5'
11101 5' -60.4 NC_002794.1 + 191519 0.7 0.569454
Target:  5'- cAGCGCCgGGCgUCGGCCcgcGCCUCccgccgcagucggGUCCg -3'
miRNA:   3'- cUUGCGG-CCG-AGCCGGc--UGGAG-------------CAGG- -5'
11101 5' -60.4 NC_002794.1 + 151509 0.7 0.570407
Target:  5'- -uGCGCuCGGUUCGGgUGGCCUgGUgCg -3'
miRNA:   3'- cuUGCG-GCCGAGCCgGCUGGAgCAgG- -5'
11101 5' -60.4 NC_002794.1 + 178291 0.7 0.574225
Target:  5'- cGAGCGaCGGCUCGacgcgggaggcgaacGCCGAaCCUCGUagagCCg -3'
miRNA:   3'- -CUUGCgGCCGAGC---------------CGGCU-GGAGCA----GG- -5'
11101 5' -60.4 NC_002794.1 + 44347 0.7 0.576136
Target:  5'- cGGCGCCGGCgagaccgagagcgCGGCgGGCgCgaCGUCCg -3'
miRNA:   3'- cUUGCGGCCGa------------GCCGgCUG-Ga-GCAGG- -5'
11101 5' -60.4 NC_002794.1 + 104262 0.7 0.579962
Target:  5'- cGGGCaGCC-GCUCGGCCGGCaC-CGUgCCg -3'
miRNA:   3'- -CUUG-CGGcCGAGCCGGCUG-GaGCA-GG- -5'
11101 5' -60.4 NC_002794.1 + 113530 0.7 0.579962
Target:  5'- --cCGCCGGCUCGGCgucgcCGGCC-CGgagcaggcgCCg -3'
miRNA:   3'- cuuGCGGCCGAGCCG-----GCUGGaGCa--------GG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.