miRNA display CGI


Results 21 - 40 of 250 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11101 5' -60.4 NC_002794.1 + 156212 0.66 0.820474
Target:  5'- gGAGgGCCGGCgacUCcGCCGGCggcuccgcgCUCGUCg -3'
miRNA:   3'- -CUUgCGGCCG---AGcCGGCUG---------GAGCAGg -5'
11101 5' -60.4 NC_002794.1 + 189388 0.66 0.820474
Target:  5'- --cCGCUGuGCUCGGCC-ACgUaGUCCg -3'
miRNA:   3'- cuuGCGGC-CGAGCCGGcUGgAgCAGG- -5'
11101 5' -60.4 NC_002794.1 + 65233 0.66 0.819663
Target:  5'- cGGGCGgCGGUcgccgCGGCggcgaucCGGCCUCG-CCg -3'
miRNA:   3'- -CUUGCgGCCGa----GCCG-------GCUGGAGCaGG- -5'
11101 5' -60.4 NC_002794.1 + 193361 0.66 0.812298
Target:  5'- cAGCaGCCGGUgccacgGGCCGcgcuccucGCCgUCGUCCg -3'
miRNA:   3'- cUUG-CGGCCGag----CCGGC--------UGG-AGCAGG- -5'
11101 5' -60.4 NC_002794.1 + 96320 0.66 0.812298
Target:  5'- cAACGCCGGCaugCuGCCGcAUCUCaaggaggaucugGUCCg -3'
miRNA:   3'- cUUGCGGCCGa--GcCGGC-UGGAG------------CAGG- -5'
11101 5' -60.4 NC_002794.1 + 21405 0.66 0.812298
Target:  5'- --cCGCCGGCUCca-CGAUCUCGagCCc -3'
miRNA:   3'- cuuGCGGCCGAGccgGCUGGAGCa-GG- -5'
11101 5' -60.4 NC_002794.1 + 50730 0.66 0.812298
Target:  5'- --cCGcCCGGggCGGCCG-CCucgacucgcUCGUCCg -3'
miRNA:   3'- cuuGC-GGCCgaGCCGGCuGG---------AGCAGG- -5'
11101 5' -60.4 NC_002794.1 + 138415 0.66 0.812298
Target:  5'- --uCGCCGGC-C-GCCGA-CUCGUCg -3'
miRNA:   3'- cuuGCGGCCGaGcCGGCUgGAGCAGg -5'
11101 5' -60.4 NC_002794.1 + 137389 0.66 0.812298
Target:  5'- cGACGCgGGUcCGGuCUGuCCggCGUCCg -3'
miRNA:   3'- cUUGCGgCCGaGCC-GGCuGGa-GCAGG- -5'
11101 5' -60.4 NC_002794.1 + 134293 0.66 0.812298
Target:  5'- cGAGCGCCucuucgaUCGGCUGugucGCCUCGcgCCg -3'
miRNA:   3'- -CUUGCGGccg----AGCCGGC----UGGAGCa-GG- -5'
11101 5' -60.4 NC_002794.1 + 52790 0.66 0.812298
Target:  5'- uGACGCuCGagccGCUCGucggacGCCGGCagCUCGUCCu -3'
miRNA:   3'- cUUGCG-GC----CGAGC------CGGCUG--GAGCAGG- -5'
11101 5' -60.4 NC_002794.1 + 188771 0.66 0.812298
Target:  5'- gGAACaGcCCGGUgcagcgguagCGGCCGGCCcCG-CCg -3'
miRNA:   3'- -CUUG-C-GGCCGa---------GCCGGCUGGaGCaGG- -5'
11101 5' -60.4 NC_002794.1 + 34080 0.66 0.811473
Target:  5'- --cCGCCGGCggccgggcagccgUCGGgCGGCCcggaccgcgaCGUCCg -3'
miRNA:   3'- cuuGCGGCCG-------------AGCCgGCUGGa---------GCAGG- -5'
11101 5' -60.4 NC_002794.1 + 121955 0.66 0.807323
Target:  5'- cGAGCGCCuggagcgcuccgugcGGCUCGGuCCcGCCgagCGcggCCg -3'
miRNA:   3'- -CUUGCGG---------------CCGAGCC-GGcUGGa--GCa--GG- -5'
11101 5' -60.4 NC_002794.1 + 154327 0.66 0.806489
Target:  5'- cGGCGUCGGUcgucccgggugccgCGGCCGAgCUCccgcgcgGUCCa -3'
miRNA:   3'- cUUGCGGCCGa-------------GCCGGCUgGAG-------CAGG- -5'
11101 5' -60.4 NC_002794.1 + 37405 0.66 0.803977
Target:  5'- aGAGCGCCcGCUgCaGCCGGuCCagcgcCGUCCg -3'
miRNA:   3'- -CUUGCGGcCGA-GcCGGCU-GGa----GCAGG- -5'
11101 5' -60.4 NC_002794.1 + 37895 0.66 0.803977
Target:  5'- cGGugGCggcggcagCGGCUC-GCCGGCCUCaacGUCa -3'
miRNA:   3'- -CUugCG--------GCCGAGcCGGCUGGAG---CAGg -5'
11101 5' -60.4 NC_002794.1 + 14649 0.66 0.803977
Target:  5'- aGACGCCGGCgccgcggcgUCGGuCCGACUcgCGg-- -3'
miRNA:   3'- cUUGCGGCCG---------AGCC-GGCUGGa-GCagg -5'
11101 5' -60.4 NC_002794.1 + 180019 0.66 0.803977
Target:  5'- cGACGaCGGCcgCGGCCGuCCgacccgcaucaCGUCCu -3'
miRNA:   3'- cUUGCgGCCGa-GCCGGCuGGa----------GCAGG- -5'
11101 5' -60.4 NC_002794.1 + 101446 0.66 0.803977
Target:  5'- gGGACGCCGGCgCGcccgcccgaaacGCCGGCg-CGcCCg -3'
miRNA:   3'- -CUUGCGGCCGaGC------------CGGCUGgaGCaGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.