miRNA display CGI


Results 41 - 60 of 250 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11101 5' -60.4 NC_002794.1 + 180019 0.66 0.803977
Target:  5'- cGACGaCGGCcgCGGCCGuCCgacccgcaucaCGUCCu -3'
miRNA:   3'- cUUGCgGCCGa-GCCGGCuGGa----------GCAGG- -5'
11101 5' -60.4 NC_002794.1 + 14649 0.66 0.803977
Target:  5'- aGACGCCGGCgccgcggcgUCGGuCCGACUcgCGg-- -3'
miRNA:   3'- cUUGCGGCCG---------AGCC-GGCUGGa-GCagg -5'
11101 5' -60.4 NC_002794.1 + 37895 0.66 0.803977
Target:  5'- cGGugGCggcggcagCGGCUC-GCCGGCCUCaacGUCa -3'
miRNA:   3'- -CUugCG--------GCCGAGcCGGCUGGAG---CAGg -5'
11101 5' -60.4 NC_002794.1 + 58026 0.66 0.803977
Target:  5'- --cCGCCGGCgaacccgcCGcGCCG-CC-CGUCCc -3'
miRNA:   3'- cuuGCGGCCGa-------GC-CGGCuGGaGCAGG- -5'
11101 5' -60.4 NC_002794.1 + 84177 0.66 0.803137
Target:  5'- cAGCGCuCGGCccggcgcUCGGCCcGCCUCccaCCa -3'
miRNA:   3'- cUUGCG-GCCG-------AGCCGGcUGGAGca-GG- -5'
11101 5' -60.4 NC_002794.1 + 78343 0.66 0.801453
Target:  5'- aGGCGCCGGaaugUCGGCCagcagcuccaacacGGCCUgcUCCg -3'
miRNA:   3'- cUUGCGGCCg---AGCCGG--------------CUGGAgcAGG- -5'
11101 5' -60.4 NC_002794.1 + 18882 0.66 0.801453
Target:  5'- cGACGCCGGCgCGGagcgucaccccuccCCGACggCGcCCg -3'
miRNA:   3'- cUUGCGGCCGaGCC--------------GGCUGgaGCaGG- -5'
11101 5' -60.4 NC_002794.1 + 182066 0.66 0.795517
Target:  5'- aGGGCGCCuGCgucCGGUCGGCCacCG-CCa -3'
miRNA:   3'- -CUUGCGGcCGa--GCCGGCUGGa-GCaGG- -5'
11101 5' -60.4 NC_002794.1 + 13740 0.66 0.795517
Target:  5'- -cACGCuccCGGC-CGGCCGACaccagaCUCG-CCg -3'
miRNA:   3'- cuUGCG---GCCGaGCCGGCUG------GAGCaGG- -5'
11101 5' -60.4 NC_002794.1 + 12231 0.66 0.795517
Target:  5'- cGGCGCCGGCggcGCCGuCCgCGgcgCCg -3'
miRNA:   3'- cUUGCGGCCGagcCGGCuGGaGCa--GG- -5'
11101 5' -60.4 NC_002794.1 + 19326 0.66 0.795517
Target:  5'- -cGCGCUGGCgacccgCGcGCCGGucacccCCUCG-CCg -3'
miRNA:   3'- cuUGCGGCCGa-----GC-CGGCU------GGAGCaGG- -5'
11101 5' -60.4 NC_002794.1 + 17504 0.66 0.795517
Target:  5'- cGACGCCGGCcgagaUCGGC-GcCCUCcuggaagagGUCCu -3'
miRNA:   3'- cUUGCGGCCG-----AGCCGgCuGGAG---------CAGG- -5'
11101 5' -60.4 NC_002794.1 + 115065 0.66 0.795517
Target:  5'- cAGCGCCguccaguccacGGCcucggCGGCCGcccgcaGCCgcgCGUCCg -3'
miRNA:   3'- cUUGCGG-----------CCGa----GCCGGC------UGGa--GCAGG- -5'
11101 5' -60.4 NC_002794.1 + 50044 0.66 0.795517
Target:  5'- -cGCGCUuGCggCGGCUGACCUUGaugaCCg -3'
miRNA:   3'- cuUGCGGcCGa-GCCGGCUGGAGCa---GG- -5'
11101 5' -60.4 NC_002794.1 + 76478 0.66 0.795517
Target:  5'- --cCGCCGGCcCGGCCGcaGCUcCGaCCc -3'
miRNA:   3'- cuuGCGGCCGaGCCGGC--UGGaGCaGG- -5'
11101 5' -60.4 NC_002794.1 + 141641 0.66 0.795517
Target:  5'- gGAAgGCCGGCgUGGCCGcgGCCg---CCg -3'
miRNA:   3'- -CUUgCGGCCGaGCCGGC--UGGagcaGG- -5'
11101 5' -60.4 NC_002794.1 + 57416 0.66 0.794664
Target:  5'- cGugGCCGGCgugcuggUCGGCaCGGCgCcCGUCa -3'
miRNA:   3'- cUugCGGCCG-------AGCCG-GCUG-GaGCAGg -5'
11101 5' -60.4 NC_002794.1 + 85909 0.66 0.790377
Target:  5'- aGACGCCuGGUgcuuaugcaaacgugUUGGCCGGgCUCGgaaCCg -3'
miRNA:   3'- cUUGCGG-CCG---------------AGCCGGCUgGAGCa--GG- -5'
11101 5' -60.4 NC_002794.1 + 193582 0.66 0.786925
Target:  5'- -cGCGCCGGUggCGGCUcACCgUCGUg- -3'
miRNA:   3'- cuUGCGGCCGa-GCCGGcUGG-AGCAgg -5'
11101 5' -60.4 NC_002794.1 + 82666 0.66 0.786925
Target:  5'- cGACGCCGcGC-CGGCgGAUCgcacgcCGUUCg -3'
miRNA:   3'- cUUGCGGC-CGaGCCGgCUGGa-----GCAGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.