miRNA display CGI


Results 61 - 80 of 250 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11101 5' -60.4 NC_002794.1 + 193582 0.66 0.786925
Target:  5'- -cGCGCCGGUggCGGCUcACCgUCGUg- -3'
miRNA:   3'- cuUGCGGCCGa-GCCGGcUGG-AGCAgg -5'
11101 5' -60.4 NC_002794.1 + 59311 0.66 0.786925
Target:  5'- cAGCGCCacGGCgCGcCCGACUUCG-CCg -3'
miRNA:   3'- cUUGCGG--CCGaGCcGGCUGGAGCaGG- -5'
11101 5' -60.4 NC_002794.1 + 96739 0.66 0.785192
Target:  5'- cGAcCGCCGGCgcgucucgcaagCGGCCGGCggucgagUCGcCCg -3'
miRNA:   3'- -CUuGCGGCCGa-----------GCCGGCUGg------AGCaGG- -5'
11101 5' -60.4 NC_002794.1 + 116841 0.67 0.78171
Target:  5'- gGGACGCgCGGUggaucuucaugcggCGGCCGugucGCgCUCGUCa -3'
miRNA:   3'- -CUUGCG-GCCGa-------------GCCGGC----UG-GAGCAGg -5'
11101 5' -60.4 NC_002794.1 + 45473 0.67 0.778209
Target:  5'- aGggUcCCGaGCUCGGCCu-CCgcCGUCCa -3'
miRNA:   3'- -CuuGcGGC-CGAGCCGGcuGGa-GCAGG- -5'
11101 5' -60.4 NC_002794.1 + 63709 0.67 0.778209
Target:  5'- cGGCGCCGGCgccGCCGgACCgcCGaUCCa -3'
miRNA:   3'- cUUGCGGCCGagcCGGC-UGGa-GC-AGG- -5'
11101 5' -60.4 NC_002794.1 + 91607 0.67 0.778209
Target:  5'- -uGCGCgCGGC-CGagggccacGCCGACCUCcugcgccgccuGUCCg -3'
miRNA:   3'- cuUGCG-GCCGaGC--------CGGCUGGAG-----------CAGG- -5'
11101 5' -60.4 NC_002794.1 + 44644 0.67 0.778209
Target:  5'- --cCGCCGcaggauGUUCGGUCGACagguccgCGUCCg -3'
miRNA:   3'- cuuGCGGC------CGAGCCGGCUGga-----GCAGG- -5'
11101 5' -60.4 NC_002794.1 + 61828 0.67 0.778209
Target:  5'- --cCGCCGGC--GGCCGGCgUCacUCCg -3'
miRNA:   3'- cuuGCGGCCGagCCGGCUGgAGc-AGG- -5'
11101 5' -60.4 NC_002794.1 + 86608 0.67 0.778209
Target:  5'- cGGAUGCucCGGCUCGaGcCCGACCggaUGcUCCg -3'
miRNA:   3'- -CUUGCG--GCCGAGC-C-GGCUGGa--GC-AGG- -5'
11101 5' -60.4 NC_002794.1 + 86440 0.67 0.778209
Target:  5'- cGGAUGCucCGGCUCGaGcCCGACCggaUGcUCCg -3'
miRNA:   3'- -CUUGCG--GCCGAGC-C-GGCUGGa--GC-AGG- -5'
11101 5' -60.4 NC_002794.1 + 86248 0.67 0.778209
Target:  5'- cGGAUGCucCGGCUCGaGcCCGACCggaUGcUCCg -3'
miRNA:   3'- -CUUGCG--GCCGAGC-C-GGCUGGa--GC-AGG- -5'
11101 5' -60.4 NC_002794.1 + 69066 0.67 0.778209
Target:  5'- cGGGcCGCC-GC-CGGCCGcCCUCcUCCg -3'
miRNA:   3'- -CUU-GCGGcCGaGCCGGCuGGAGcAGG- -5'
11101 5' -60.4 NC_002794.1 + 93076 0.67 0.778209
Target:  5'- cGAGCGCCuGUUCccgGGCugCGGCCUC-UCCu -3'
miRNA:   3'- -CUUGCGGcCGAG---CCG--GCUGGAGcAGG- -5'
11101 5' -60.4 NC_002794.1 + 186032 0.67 0.778209
Target:  5'- cGGAC-CCgGGCccCGGCUGGCCgUCGUUCc -3'
miRNA:   3'- -CUUGcGG-CCGa-GCCGGCUGG-AGCAGG- -5'
11101 5' -60.4 NC_002794.1 + 129235 0.67 0.777331
Target:  5'- cGAACgGgCGGCUcCGGCgGacucgggucgagcGCCUCGUCg -3'
miRNA:   3'- -CUUG-CgGCCGA-GCCGgC-------------UGGAGCAGg -5'
11101 5' -60.4 NC_002794.1 + 116802 0.67 0.775571
Target:  5'- ---aGCCGGCUCGGgCGccguagcgcgggucGCuCUgGUCCc -3'
miRNA:   3'- cuugCGGCCGAGCCgGC--------------UG-GAgCAGG- -5'
11101 5' -60.4 NC_002794.1 + 12199 0.67 0.769377
Target:  5'- cGGGCGCC-GCUCGgacguGCCGGCggCGUCg -3'
miRNA:   3'- -CUUGCGGcCGAGC-----CGGCUGgaGCAGg -5'
11101 5' -60.4 NC_002794.1 + 74016 0.67 0.769377
Target:  5'- -uGCGCCuGUUCGGCCGccACCcCGgCCc -3'
miRNA:   3'- cuUGCGGcCGAGCCGGC--UGGaGCaGG- -5'
11101 5' -60.4 NC_002794.1 + 62633 0.67 0.766706
Target:  5'- uGGGCGUCGGaccccgucgcccgcCUCGGCaaa-CUCGUCCu -3'
miRNA:   3'- -CUUGCGGCC--------------GAGCCGgcugGAGCAGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.