miRNA display CGI


Results 81 - 100 of 250 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11101 5' -60.4 NC_002794.1 + 44260 0.67 0.765813
Target:  5'- ---gGgCGGCUCGGCCG-CCggggacggaggaGUCCg -3'
miRNA:   3'- cuugCgGCCGAGCCGGCuGGag----------CAGG- -5'
11101 5' -60.4 NC_002794.1 + 60641 0.67 0.760435
Target:  5'- cGGCGCCGGCggcgcCGGCC-ACC-CGgcgcgcgCCg -3'
miRNA:   3'- cUUGCGGCCGa----GCCGGcUGGaGCa------GG- -5'
11101 5' -60.4 NC_002794.1 + 44459 0.67 0.760435
Target:  5'- cGGACGUCGGCggCGGa-GACCgcccCGUCg -3'
miRNA:   3'- -CUUGCGGCCGa-GCCggCUGGa---GCAGg -5'
11101 5' -60.4 NC_002794.1 + 119756 0.67 0.760435
Target:  5'- cAGCuCCGGaccaggucgCGGCCGGCCUCcaggcggcuccgGUCCg -3'
miRNA:   3'- cUUGcGGCCga-------GCCGGCUGGAG------------CAGG- -5'
11101 5' -60.4 NC_002794.1 + 14525 0.67 0.751392
Target:  5'- uGGCGCC-GCUCGGCCacggcGCuCUCGcCCc -3'
miRNA:   3'- cUUGCGGcCGAGCCGGc----UG-GAGCaGG- -5'
11101 5' -60.4 NC_002794.1 + 64481 0.67 0.751392
Target:  5'- --uCGCCGGCUUgaacgugcaGGCCGGCCcCuggCCg -3'
miRNA:   3'- cuuGCGGCCGAG---------CCGGCUGGaGca-GG- -5'
11101 5' -60.4 NC_002794.1 + 46222 0.67 0.751392
Target:  5'- ---gGCCaGCUCGuccagcucgcucGCCGGCggCUCGUCCg -3'
miRNA:   3'- cuugCGGcCGAGC------------CGGCUG--GAGCAGG- -5'
11101 5' -60.4 NC_002794.1 + 131288 0.67 0.751392
Target:  5'- cGGCGCCGucGCUCcGCCGcccguggucgucACCUCGcCCu -3'
miRNA:   3'- cUUGCGGC--CGAGcCGGC------------UGGAGCaGG- -5'
11101 5' -60.4 NC_002794.1 + 68302 0.67 0.751392
Target:  5'- cGAACGCCucGUggCGGCCGACg-CGuUCCg -3'
miRNA:   3'- -CUUGCGGc-CGa-GCCGGCUGgaGC-AGG- -5'
11101 5' -60.4 NC_002794.1 + 67025 0.67 0.751392
Target:  5'- cGGCgGCCGGCUCccgccgcgucGCgGACCcggCGUCCg -3'
miRNA:   3'- cUUG-CGGCCGAGc---------CGgCUGGa--GCAGG- -5'
11101 5' -60.4 NC_002794.1 + 145681 0.67 0.742256
Target:  5'- cGACGUCGGUagaGGUCGAgCUCGaCCu -3'
miRNA:   3'- cUUGCGGCCGag-CCGGCUgGAGCaGG- -5'
11101 5' -60.4 NC_002794.1 + 48932 0.67 0.742256
Target:  5'- cAGCGCCaggcGCUCGG-CGACCUCuUCg -3'
miRNA:   3'- cUUGCGGc---CGAGCCgGCUGGAGcAGg -5'
11101 5' -60.4 NC_002794.1 + 49174 0.67 0.742256
Target:  5'- gGGAgGCCGaGCccaCGGCCu-UCUCGUCCc -3'
miRNA:   3'- -CUUgCGGC-CGa--GCCGGcuGGAGCAGG- -5'
11101 5' -60.4 NC_002794.1 + 145534 0.67 0.742256
Target:  5'- cGAGCGCCucgGGCgccccgagCGGcCCGACCg-GUUCg -3'
miRNA:   3'- -CUUGCGG---CCGa-------GCC-GGCUGGagCAGG- -5'
11101 5' -60.4 NC_002794.1 + 150292 0.67 0.742256
Target:  5'- -cGCGCCGGUgugguggcagCGGaucaCCGGCCgCGUCUa -3'
miRNA:   3'- cuUGCGGCCGa---------GCC----GGCUGGaGCAGG- -5'
11101 5' -60.4 NC_002794.1 + 116079 0.67 0.733033
Target:  5'- gGAGCGCuCGGCgCGGCgGuCgUCG-CCg -3'
miRNA:   3'- -CUUGCG-GCCGaGCCGgCuGgAGCaGG- -5'
11101 5' -60.4 NC_002794.1 + 131023 0.68 0.723733
Target:  5'- cGGugGUCGuGCggcgCGGCCGGCUgccgccgauguUCGUCg -3'
miRNA:   3'- -CUugCGGC-CGa---GCCGGCUGG-----------AGCAGg -5'
11101 5' -60.4 NC_002794.1 + 114364 0.68 0.723733
Target:  5'- cAGgGCCGGCUgcagGGCCGcguagGCCUugaCGUCCu -3'
miRNA:   3'- cUUgCGGCCGAg---CCGGC-----UGGA---GCAGG- -5'
11101 5' -60.4 NC_002794.1 + 98979 0.68 0.723733
Target:  5'- cGGCGCCguGGcCUCGGUggucggCGGCUUCGUCa -3'
miRNA:   3'- cUUGCGG--CC-GAGCCG------GCUGGAGCAGg -5'
11101 5' -60.4 NC_002794.1 + 96923 0.68 0.723733
Target:  5'- aGGCGCCGGCgacagcacgccgUCGGagucuccggaGACCUCGgCCg -3'
miRNA:   3'- cUUGCGGCCG------------AGCCgg--------CUGGAGCaGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.