miRNA display CGI


Results 1 - 20 of 250 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11101 5' -60.4 NC_002794.1 + 104 0.71 0.514073
Target:  5'- cGAACGCCGGC-CGaccgcacgaaacGCCGACCggaGcCCg -3'
miRNA:   3'- -CUUGCGGCCGaGC------------CGGCUGGag-CaGG- -5'
11101 5' -60.4 NC_002794.1 + 10952 0.71 0.52332
Target:  5'- gGAAC-CCGGaggGGCCGGCCgagaCGUCCg -3'
miRNA:   3'- -CUUGcGGCCgagCCGGCUGGa---GCAGG- -5'
11101 5' -60.4 NC_002794.1 + 11361 0.66 0.828497
Target:  5'- -cGCGCUGaGCUUucggcaaaaGCCGGCCUCGaCCc -3'
miRNA:   3'- cuUGCGGC-CGAGc--------CGGCUGGAGCaGG- -5'
11101 5' -60.4 NC_002794.1 + 12199 0.67 0.769377
Target:  5'- cGGGCGCC-GCUCGgacguGCCGGCggCGUCg -3'
miRNA:   3'- -CUUGCGGcCGAGC-----CGGCUGgaGCAGg -5'
11101 5' -60.4 NC_002794.1 + 12231 0.66 0.795517
Target:  5'- cGGCGCCGGCggcGCCGuCCgCGgcgCCg -3'
miRNA:   3'- cUUGCGGCCGagcCGGCuGGaGCa--GG- -5'
11101 5' -60.4 NC_002794.1 + 13579 0.71 0.55142
Target:  5'- --cUGUCGGUcaaCGGCaCGACCgUCGUCCg -3'
miRNA:   3'- cuuGCGGCCGa--GCCG-GCUGG-AGCAGG- -5'
11101 5' -60.4 NC_002794.1 + 13631 0.7 0.608802
Target:  5'- aGGACGUCGGCcCGuuCGACCUgcagcUGUCCu -3'
miRNA:   3'- -CUUGCGGCCGaGCcgGCUGGA-----GCAGG- -5'
11101 5' -60.4 NC_002794.1 + 13740 0.66 0.795517
Target:  5'- -cACGCuccCGGC-CGGCCGACaccagaCUCG-CCg -3'
miRNA:   3'- cuUGCG---GCCGaGCCGGCUG------GAGCaGG- -5'
11101 5' -60.4 NC_002794.1 + 13811 0.69 0.657092
Target:  5'- cGGGC-CCGGCcggCGGCgaCGGCCUCcUCCu -3'
miRNA:   3'- -CUUGcGGCCGa--GCCG--GCUGGAGcAGG- -5'
11101 5' -60.4 NC_002794.1 + 14252 0.74 0.385312
Target:  5'- aGAcCGCCGGCUCGaccCCGACCgaggUGUUCg -3'
miRNA:   3'- -CUuGCGGCCGAGCc--GGCUGGa---GCAGG- -5'
11101 5' -60.4 NC_002794.1 + 14525 0.67 0.751392
Target:  5'- uGGCGCC-GCUCGGCCacggcGCuCUCGcCCc -3'
miRNA:   3'- cUUGCGGcCGAGCCGGc----UG-GAGCaGG- -5'
11101 5' -60.4 NC_002794.1 + 14559 0.68 0.695441
Target:  5'- cGACGCgcgggaGGCgagcCGGCCGACCgaagCGggCCg -3'
miRNA:   3'- cUUGCGg-----CCGa---GCCGGCUGGa---GCa-GG- -5'
11101 5' -60.4 NC_002794.1 + 14649 0.66 0.803977
Target:  5'- aGACGCCGGCgccgcggcgUCGGuCCGACUcgCGg-- -3'
miRNA:   3'- cUUGCGGCCG---------AGCC-GGCUGGa-GCagg -5'
11101 5' -60.4 NC_002794.1 + 14713 0.66 0.828497
Target:  5'- gGAGCGCugcucgcggcuuCGGCUCGGgguCCGGCg-CGUCa -3'
miRNA:   3'- -CUUGCG------------GCCGAGCC---GGCUGgaGCAGg -5'
11101 5' -60.4 NC_002794.1 + 15007 0.66 0.803977
Target:  5'- ---gGgCGGuCUCGGCUGGCUgcUCGUCg -3'
miRNA:   3'- cuugCgGCC-GAGCCGGCUGG--AGCAGg -5'
11101 5' -60.4 NC_002794.1 + 16170 0.7 0.608802
Target:  5'- uGAACGgCGGg-UGGCCGACCgugaacuguaCGUCCc -3'
miRNA:   3'- -CUUGCgGCCgaGCCGGCUGGa---------GCAGG- -5'
11101 5' -60.4 NC_002794.1 + 17504 0.66 0.795517
Target:  5'- cGACGCCGGCcgagaUCGGC-GcCCUCcuggaagagGUCCu -3'
miRNA:   3'- cUUGCGGCCG-----AGCCGgCuGGAG---------CAGG- -5'
11101 5' -60.4 NC_002794.1 + 17880 0.68 0.710596
Target:  5'- -cACGCUGGCUCccaaccugagccuGuuGACCggCGUCCg -3'
miRNA:   3'- cuUGCGGCCGAGc------------CggCUGGa-GCAGG- -5'
11101 5' -60.4 NC_002794.1 + 17932 0.66 0.820474
Target:  5'- ---gGCCGGCUCc-CCGACCUgGcggCCa -3'
miRNA:   3'- cuugCGGCCGAGccGGCUGGAgCa--GG- -5'
11101 5' -60.4 NC_002794.1 + 18805 0.72 0.450578
Target:  5'- --cCGCCGGCcaacgggUCGG-CGACCUCGgCCg -3'
miRNA:   3'- cuuGCGGCCG-------AGCCgGCUGGAGCaGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.