miRNA display CGI


Results 21 - 40 of 250 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11101 5' -60.4 NC_002794.1 + 18882 0.66 0.801453
Target:  5'- cGACGCCGGCgCGGagcgucaccccuccCCGACggCGcCCg -3'
miRNA:   3'- cUUGCGGCCGaGCC--------------GGCUGgaGCaGG- -5'
11101 5' -60.4 NC_002794.1 + 19326 0.66 0.795517
Target:  5'- -cGCGCUGGCgacccgCGcGCCGGucacccCCUCG-CCg -3'
miRNA:   3'- cuUGCGGCCGa-----GC-CGGCU------GGAGCaGG- -5'
11101 5' -60.4 NC_002794.1 + 19460 0.66 0.820474
Target:  5'- cGAGCGgCGGCggCGGCgGgACC-CG-CCg -3'
miRNA:   3'- -CUUGCgGCCGa-GCCGgC-UGGaGCaGG- -5'
11101 5' -60.4 NC_002794.1 + 19525 0.79 0.184941
Target:  5'- gGAGCGCCGGCgCGGCgCGGCC-CG-CCg -3'
miRNA:   3'- -CUUGCGGCCGaGCCG-GCUGGaGCaGG- -5'
11101 5' -60.4 NC_002794.1 + 20621 0.68 0.714363
Target:  5'- aGAUGcCCGGCUcCGGCUG-CCUCGa-- -3'
miRNA:   3'- cUUGC-GGCCGA-GCCGGCuGGAGCagg -5'
11101 5' -60.4 NC_002794.1 + 21405 0.66 0.812298
Target:  5'- --cCGCCGGCUCca-CGAUCUCGagCCc -3'
miRNA:   3'- cuuGCGGCCGAGccgGCUGGAGCa-GG- -5'
11101 5' -60.4 NC_002794.1 + 21925 0.7 0.560892
Target:  5'- aGACGaCGGCggCGGCgCGGCgCUCGUCg -3'
miRNA:   3'- cUUGCgGCCGa-GCCG-GCUG-GAGCAGg -5'
11101 5' -60.4 NC_002794.1 + 27400 0.68 0.695441
Target:  5'- cGGAUGaCC-GCUCGaCCGGCCgcccgCGUCCg -3'
miRNA:   3'- -CUUGC-GGcCGAGCcGGCUGGa----GCAGG- -5'
11101 5' -60.4 NC_002794.1 + 29086 0.71 0.504894
Target:  5'- uGACGUgCGGCUCGGCuCGuCgUCGUCa -3'
miRNA:   3'- cUUGCG-GCCGAGCCG-GCuGgAGCAGg -5'
11101 5' -60.4 NC_002794.1 + 29752 0.69 0.637782
Target:  5'- cGGGCGCCGaGCcCGcGCCGAgcgUCUCGgCCg -3'
miRNA:   3'- -CUUGCGGC-CGaGC-CGGCU---GGAGCaGG- -5'
11101 5' -60.4 NC_002794.1 + 30562 0.71 0.513153
Target:  5'- -cGCGCCcGCUCGuucgucaGCgugaCGACCUCGUCCu -3'
miRNA:   3'- cuUGCGGcCGAGC-------CG----GCUGGAGCAGG- -5'
11101 5' -60.4 NC_002794.1 + 31330 0.69 0.618455
Target:  5'- --uCGUCGGCUCGGCgcccGCCgUGUCCg -3'
miRNA:   3'- cuuGCGGCCGAGCCGgc--UGGaGCAGG- -5'
11101 5' -60.4 NC_002794.1 + 32314 0.69 0.665762
Target:  5'- -cGCGCCGGCcgCGGCCGgagacaaGCC-C-UCCg -3'
miRNA:   3'- cuUGCGGCCGa-GCCGGC-------UGGaGcAGG- -5'
11101 5' -60.4 NC_002794.1 + 32778 0.73 0.442835
Target:  5'- cGAACGCCGGUucgucaucccggUCGGUcuucgccgCGACCgUCGUCUu -3'
miRNA:   3'- -CUUGCGGCCG------------AGCCG--------GCUGG-AGCAGG- -5'
11101 5' -60.4 NC_002794.1 + 34080 0.66 0.811473
Target:  5'- --cCGCCGGCggccgggcagccgUCGGgCGGCCcggaccgcgaCGUCCg -3'
miRNA:   3'- cuuGCGGCCG-------------AGCCgGCUGGa---------GCAGG- -5'
11101 5' -60.4 NC_002794.1 + 36375 0.66 0.820474
Target:  5'- -cGCGCCcgcGGCgaagCGGUCGACCcagaaaUCGaCCg -3'
miRNA:   3'- cuUGCGG---CCGa---GCCGGCUGG------AGCaGG- -5'
11101 5' -60.4 NC_002794.1 + 37405 0.66 0.803977
Target:  5'- aGAGCGCCcGCUgCaGCCGGuCCagcgcCGUCCg -3'
miRNA:   3'- -CUUGCGGcCGA-GcCGGCU-GGa----GCAGG- -5'
11101 5' -60.4 NC_002794.1 + 37762 0.79 0.198496
Target:  5'- cGGCGCCGGCgggagCGGCCGuCgUCGUCg -3'
miRNA:   3'- cUUGCGGCCGa----GCCGGCuGgAGCAGg -5'
11101 5' -60.4 NC_002794.1 + 37895 0.66 0.803977
Target:  5'- cGGugGCggcggcagCGGCUC-GCCGGCCUCaacGUCa -3'
miRNA:   3'- -CUugCG--------GCCGAGcCGGCUGGAG---CAGg -5'
11101 5' -60.4 NC_002794.1 + 38568 0.72 0.451442
Target:  5'- --cCGCCGGCgccucgacggagUCGGCCG-CCUCcUCCc -3'
miRNA:   3'- cuuGCGGCCG------------AGCCGGCuGGAGcAGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.