miRNA display CGI


Results 41 - 60 of 250 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11101 5' -60.4 NC_002794.1 + 39041 0.66 0.823702
Target:  5'- --uCGCCGGgaCGGCgGGCaccacgugaaccagUCGUCCc -3'
miRNA:   3'- cuuGCGGCCgaGCCGgCUGg-------------AGCAGG- -5'
11101 5' -60.4 NC_002794.1 + 40462 0.69 0.646477
Target:  5'- cGGGCGCugucccuucgggCGGCUcaucgaaCGGCCGGCgCUCG-CCg -3'
miRNA:   3'- -CUUGCG------------GCCGA-------GCCGGCUG-GAGCaGG- -5'
11101 5' -60.4 NC_002794.1 + 44175 0.72 0.490358
Target:  5'- cGAGCGgCGGCUCGucgacuccgggcgaaGCCgGGCCgaCGUCCg -3'
miRNA:   3'- -CUUGCgGCCGAGC---------------CGG-CUGGa-GCAGG- -5'
11101 5' -60.4 NC_002794.1 + 44260 0.67 0.765813
Target:  5'- ---gGgCGGCUCGGCCG-CCggggacggaggaGUCCg -3'
miRNA:   3'- cuugCgGCCGAGCCGGCuGGag----------CAGG- -5'
11101 5' -60.4 NC_002794.1 + 44347 0.7 0.576136
Target:  5'- cGGCGCCGGCgagaccgagagcgCGGCgGGCgCgaCGUCCg -3'
miRNA:   3'- cUUGCGGCCGa------------GCCGgCUG-Ga-GCAGG- -5'
11101 5' -60.4 NC_002794.1 + 44459 0.67 0.760435
Target:  5'- cGGACGUCGGCggCGGa-GACCgcccCGUCg -3'
miRNA:   3'- -CUUGCGGCCGa-GCCggCUGGa---GCAGg -5'
11101 5' -60.4 NC_002794.1 + 44644 0.67 0.778209
Target:  5'- --cCGCCGcaggauGUUCGGUCGACagguccgCGUCCg -3'
miRNA:   3'- cuuGCGGC------CGAGCCGGCUGga-----GCAGG- -5'
11101 5' -60.4 NC_002794.1 + 45473 0.67 0.778209
Target:  5'- aGggUcCCGaGCUCGGCCu-CCgcCGUCCa -3'
miRNA:   3'- -CuuGcGGC-CGAGCCGGcuGGa-GCAGG- -5'
11101 5' -60.4 NC_002794.1 + 46222 0.67 0.751392
Target:  5'- ---gGCCaGCUCGuccagcucgcucGCCGGCggCUCGUCCg -3'
miRNA:   3'- cuugCGGcCGAGC------------CGGCUG--GAGCAGG- -5'
11101 5' -60.4 NC_002794.1 + 47960 0.73 0.442835
Target:  5'- cGGCGCCGGCUgGG-CGACCgccgcgCGcUCCu -3'
miRNA:   3'- cUUGCGGCCGAgCCgGCUGGa-----GC-AGG- -5'
11101 5' -60.4 NC_002794.1 + 48539 0.7 0.600128
Target:  5'- ---gGCuCGGgUCGGCCGACCacuccgccggccgccCGUCCa -3'
miRNA:   3'- cuugCG-GCCgAGCCGGCUGGa--------------GCAGG- -5'
11101 5' -60.4 NC_002794.1 + 48932 0.67 0.742256
Target:  5'- cAGCGCCaggcGCUCGG-CGACCUCuUCg -3'
miRNA:   3'- cUUGCGGc---CGAGCCgGCUGGAGcAGg -5'
11101 5' -60.4 NC_002794.1 + 49014 0.72 0.495787
Target:  5'- -cGCGCC-GCggCGGCCGcgGCgUCGUCCg -3'
miRNA:   3'- cuUGCGGcCGa-GCCGGC--UGgAGCAGG- -5'
11101 5' -60.4 NC_002794.1 + 49174 0.67 0.742256
Target:  5'- gGGAgGCCGaGCccaCGGCCu-UCUCGUCCc -3'
miRNA:   3'- -CUUgCGGC-CGa--GCCGGcuGGAGCAGG- -5'
11101 5' -60.4 NC_002794.1 + 49418 0.7 0.599165
Target:  5'- -cGCGgCGGCggCGGCCGuCacggCGUCCg -3'
miRNA:   3'- cuUGCgGCCGa-GCCGGCuGga--GCAGG- -5'
11101 5' -60.4 NC_002794.1 + 49480 0.68 0.695441
Target:  5'- --cCGCCgcGGgUCuGUCGACCUCGUCg -3'
miRNA:   3'- cuuGCGG--CCgAGcCGGCUGGAGCAGg -5'
11101 5' -60.4 NC_002794.1 + 49615 0.69 0.618455
Target:  5'- cGGGCGCCGGC--GGC--GCCUCGcCCg -3'
miRNA:   3'- -CUUGCGGCCGagCCGgcUGGAGCaGG- -5'
11101 5' -60.4 NC_002794.1 + 50044 0.66 0.795517
Target:  5'- -cGCGCUuGCggCGGCUGACCUUGaugaCCg -3'
miRNA:   3'- cuUGCGGcCGa-GCCGGCUGGAGCa---GG- -5'
11101 5' -60.4 NC_002794.1 + 50730 0.66 0.812298
Target:  5'- --cCGcCCGGggCGGCCG-CCucgacucgcUCGUCCg -3'
miRNA:   3'- cuuGC-GGCCgaGCCGGCuGG---------AGCAGG- -5'
11101 5' -60.4 NC_002794.1 + 52790 0.66 0.812298
Target:  5'- uGACGCuCGagccGCUCGucggacGCCGGCagCUCGUCCu -3'
miRNA:   3'- cUUGCG-GC----CGAGC------CGGCUG--GAGCAGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.