miRNA display CGI


Results 61 - 80 of 250 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11101 5' -60.4 NC_002794.1 + 52946 0.69 0.628117
Target:  5'- cGAGCaaGCCcagcaGGUccUCGGCCaggugcucGGCCUCGUCCu -3'
miRNA:   3'- -CUUG--CGG-----CCG--AGCCGG--------CUGGAGCAGG- -5'
11101 5' -60.4 NC_002794.1 + 53868 0.71 0.532629
Target:  5'- cGACGaCGGuCUCGGCgGAcuCCUCGUCg -3'
miRNA:   3'- cUUGCgGCC-GAGCCGgCU--GGAGCAGg -5'
11101 5' -60.4 NC_002794.1 + 54861 0.66 0.820474
Target:  5'- ---gGCCGGCgcgGGCCG-CCgcagCGUCg -3'
miRNA:   3'- cuugCGGCCGag-CCGGCuGGa---GCAGg -5'
11101 5' -60.4 NC_002794.1 + 56917 0.74 0.377506
Target:  5'- cGGGCGCCGGg-CuGCCGGCCUCGcaCCa -3'
miRNA:   3'- -CUUGCGGCCgaGcCGGCUGGAGCa-GG- -5'
11101 5' -60.4 NC_002794.1 + 57416 0.66 0.794664
Target:  5'- cGugGCCGGCgugcuggUCGGCaCGGCgCcCGUCa -3'
miRNA:   3'- cUugCGGCCG-------AGCCG-GCUG-GaGCAGg -5'
11101 5' -60.4 NC_002794.1 + 58026 0.66 0.803977
Target:  5'- --cCGCCGGCgaacccgcCGcGCCG-CC-CGUCCc -3'
miRNA:   3'- cuuGCGGCCGa-------GC-CGGCuGGaGCAGG- -5'
11101 5' -60.4 NC_002794.1 + 58845 0.68 0.703983
Target:  5'- aGGACGCCGacgugcaGCUCGucGCCGACCggcagcCGUgCg -3'
miRNA:   3'- -CUUGCGGC-------CGAGC--CGGCUGGa-----GCAgG- -5'
11101 5' -60.4 NC_002794.1 + 59311 0.66 0.786925
Target:  5'- cAGCGCCacGGCgCGcCCGACUUCG-CCg -3'
miRNA:   3'- cUUGCGG--CCGaGCcGGCUGGAGCaGG- -5'
11101 5' -60.4 NC_002794.1 + 60131 0.77 0.255771
Target:  5'- -cACGCCGGUcaCGGCCGACCUCagcuacuUCCa -3'
miRNA:   3'- cuUGCGGCCGa-GCCGGCUGGAGc------AGG- -5'
11101 5' -60.4 NC_002794.1 + 60178 0.68 0.70493
Target:  5'- -cGCGCgGGCgcUCGGCCuGCCUCuUCa -3'
miRNA:   3'- cuUGCGgCCG--AGCCGGcUGGAGcAGg -5'
11101 5' -60.4 NC_002794.1 + 60641 0.67 0.760435
Target:  5'- cGGCGCCGGCggcgcCGGCC-ACC-CGgcgcgcgCCg -3'
miRNA:   3'- cUUGCGGCCGa----GCCGGcUGGaGCa------GG- -5'
11101 5' -60.4 NC_002794.1 + 60855 0.72 0.486754
Target:  5'- --cCGCCGGCgaccUCGGCCGGCUcucaaguacaUCGgcgCCg -3'
miRNA:   3'- cuuGCGGCCG----AGCCGGCUGG----------AGCa--GG- -5'
11101 5' -60.4 NC_002794.1 + 61828 0.67 0.778209
Target:  5'- --cCGCCGGC--GGCCGGCgUCacUCCg -3'
miRNA:   3'- cuuGCGGCCGagCCGGCUGgAGc-AGG- -5'
11101 5' -60.4 NC_002794.1 + 62633 0.67 0.766706
Target:  5'- uGGGCGUCGGaccccgucgcccgcCUCGGCaaa-CUCGUCCu -3'
miRNA:   3'- -CUUGCGGCC--------------GAGCCGgcugGAGCAGG- -5'
11101 5' -60.4 NC_002794.1 + 63709 0.67 0.778209
Target:  5'- cGGCGCCGGCgccGCCGgACCgcCGaUCCa -3'
miRNA:   3'- cUUGCGGCCGagcCGGC-UGGa-GC-AGG- -5'
11101 5' -60.4 NC_002794.1 + 64481 0.67 0.751392
Target:  5'- --uCGCCGGCUUgaacgugcaGGCCGGCCcCuggCCg -3'
miRNA:   3'- cuuGCGGCCGAG---------CCGGCUGGaGca-GG- -5'
11101 5' -60.4 NC_002794.1 + 65078 0.66 0.826106
Target:  5'- aAAC-CCGGCggCGGCUcgaugguccgaagaGACCUCGuggUCCg -3'
miRNA:   3'- cUUGcGGCCGa-GCCGG--------------CUGGAGC---AGG- -5'
11101 5' -60.4 NC_002794.1 + 65233 0.66 0.819663
Target:  5'- cGGGCGgCGGUcgccgCGGCggcgaucCGGCCUCG-CCg -3'
miRNA:   3'- -CUUGCgGCCGa----GCCG-------GCUGGAGCaGG- -5'
11101 5' -60.4 NC_002794.1 + 66707 0.66 0.803977
Target:  5'- -uACGCCGcGCcCGGCaCGGCCgcCG-CCa -3'
miRNA:   3'- cuUGCGGC-CGaGCCG-GCUGGa-GCaGG- -5'
11101 5' -60.4 NC_002794.1 + 67025 0.67 0.751392
Target:  5'- cGGCgGCCGGCUCccgccgcgucGCgGACCcggCGUCCg -3'
miRNA:   3'- cUUG-CGGCCGAGc---------CGgCUGGa--GCAGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.