miRNA display CGI


Results 1 - 20 of 250 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11101 5' -60.4 NC_002794.1 + 195584 0.7 0.566596
Target:  5'- cGAcCGCCGGaC-CGGCCGACgCgcccccgcgcuggCGUCCg -3'
miRNA:   3'- -CUuGCGGCC-GaGCCGGCUG-Ga------------GCAGG- -5'
11101 5' -60.4 NC_002794.1 + 194969 0.69 0.637782
Target:  5'- cGAACGCCGGCUCGuaCaGGCacagCG-CCg -3'
miRNA:   3'- -CUUGCGGCCGAGCcgG-CUGga--GCaGG- -5'
11101 5' -60.4 NC_002794.1 + 193800 0.66 0.820474
Target:  5'- cGACGCCGGCgccCGcucgucuggcGCCGACg-CGUCg -3'
miRNA:   3'- cUUGCGGCCGa--GC----------CGGCUGgaGCAGg -5'
11101 5' -60.4 NC_002794.1 + 193582 0.66 0.786925
Target:  5'- -cGCGCCGGUggCGGCUcACCgUCGUg- -3'
miRNA:   3'- cuUGCGGCCGa-GCCGGcUGG-AGCAgg -5'
11101 5' -60.4 NC_002794.1 + 193361 0.66 0.812298
Target:  5'- cAGCaGCCGGUgccacgGGCCGcgcuccucGCCgUCGUCCg -3'
miRNA:   3'- cUUG-CGGCCGag----CCGGC--------UGG-AGCAGG- -5'
11101 5' -60.4 NC_002794.1 + 192474 0.72 0.486754
Target:  5'- cAGCGCCGaGCccUCGuCCG-CCUCGUCCc -3'
miRNA:   3'- cUUGCGGC-CG--AGCcGGCuGGAGCAGG- -5'
11101 5' -60.4 NC_002794.1 + 191670 0.72 0.486754
Target:  5'- cGGCGCCGGCagcggCGGCgGcgugcCCUCGUCg -3'
miRNA:   3'- cUUGCGGCCGa----GCCGgCu----GGAGCAGg -5'
11101 5' -60.4 NC_002794.1 + 191519 0.7 0.569454
Target:  5'- cAGCGCCgGGCgUCGGCCcgcGCCUCccgccgcagucggGUCCg -3'
miRNA:   3'- cUUGCGG-CCG-AGCCGGc--UGGAG-------------CAGG- -5'
11101 5' -60.4 NC_002794.1 + 189658 0.66 0.786925
Target:  5'- ---aGCCGGCU-GGCCGAgCggUCGcCCc -3'
miRNA:   3'- cuugCGGCCGAgCCGGCUgG--AGCaGG- -5'
11101 5' -60.4 NC_002794.1 + 189568 0.68 0.70493
Target:  5'- --cCGCuCGG-UCGGCCGGCC-CGggCCg -3'
miRNA:   3'- cuuGCG-GCCgAGCCGGCUGGaGCa-GG- -5'
11101 5' -60.4 NC_002794.1 + 189388 0.66 0.820474
Target:  5'- --cCGCUGuGCUCGGCC-ACgUaGUCCg -3'
miRNA:   3'- cuuGCGGC-CGAGCCGGcUGgAgCAGG- -5'
11101 5' -60.4 NC_002794.1 + 188771 0.66 0.812298
Target:  5'- gGAACaGcCCGGUgcagcgguagCGGCCGGCCcCG-CCg -3'
miRNA:   3'- -CUUG-C-GGCCGa---------GCCGGCUGGaGCaGG- -5'
11101 5' -60.4 NC_002794.1 + 188366 0.68 0.70493
Target:  5'- ---gGCCGGCggCGGCCGAgggCGUUCu -3'
miRNA:   3'- cuugCGGCCGa-GCCGGCUggaGCAGG- -5'
11101 5' -60.4 NC_002794.1 + 188291 0.7 0.579962
Target:  5'- aGGGCGCCGcGCgcCGGacCCGGCCcgucgucgUCGUCCu -3'
miRNA:   3'- -CUUGCGGC-CGa-GCC--GGCUGG--------AGCAGG- -5'
11101 5' -60.4 NC_002794.1 + 187765 0.71 0.532629
Target:  5'- --cCGCCGGCgcCGGUCG-CCUCGaCCc -3'
miRNA:   3'- cuuGCGGCCGa-GCCGGCuGGAGCaGG- -5'
11101 5' -60.4 NC_002794.1 + 186872 0.7 0.608802
Target:  5'- cAGCaGCgGGCUCGGCuCGcgguCCggCGUCCg -3'
miRNA:   3'- cUUG-CGgCCGAGCCG-GCu---GGa-GCAGG- -5'
11101 5' -60.4 NC_002794.1 + 186459 0.69 0.628117
Target:  5'- --uUGCUGGUUCaGCCGAcgcCCUCGcUCCu -3'
miRNA:   3'- cuuGCGGCCGAGcCGGCU---GGAGC-AGG- -5'
11101 5' -60.4 NC_002794.1 + 186032 0.67 0.778209
Target:  5'- cGGAC-CCgGGCccCGGCUGGCCgUCGUUCc -3'
miRNA:   3'- -CUUGcGG-CCGa-GCCGGCUGG-AGCAGG- -5'
11101 5' -60.4 NC_002794.1 + 185762 0.73 0.40124
Target:  5'- --cCGCCGGCgCGGCCG-CC-CGUCa -3'
miRNA:   3'- cuuGCGGCCGaGCCGGCuGGaGCAGg -5'
11101 5' -60.4 NC_002794.1 + 185580 0.66 0.828497
Target:  5'- aGGGCGCgCGGCUCucCCucCCUCuGUCCc -3'
miRNA:   3'- -CUUGCG-GCCGAGccGGcuGGAG-CAGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.