miRNA display CGI


Results 21 - 40 of 250 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11101 5' -60.4 NC_002794.1 + 184773 0.73 0.442835
Target:  5'- cAGCGCCGGCUCGcucGUCGACaC-CGUCa -3'
miRNA:   3'- cUUGCGGCCGAGC---CGGCUG-GaGCAGg -5'
11101 5' -60.4 NC_002794.1 + 184691 0.69 0.666725
Target:  5'- aGGACGCCGGCggagGGUCGuCCgUCGgcucuUCCg -3'
miRNA:   3'- -CUUGCGGCCGag--CCGGCuGG-AGC-----AGG- -5'
11101 5' -60.4 NC_002794.1 + 183359 0.7 0.606874
Target:  5'- -cGCGCCGGaccccagguccCGGCCGuGCCcCGUCCc -3'
miRNA:   3'- cuUGCGGCCga---------GCCGGC-UGGaGCAGG- -5'
11101 5' -60.4 NC_002794.1 + 182945 0.78 0.212908
Target:  5'- cGGCGCCgGGCUCGaGCCGAcggcggccggcuCCUCGUUCg -3'
miRNA:   3'- cUUGCGG-CCGAGC-CGGCU------------GGAGCAGG- -5'
11101 5' -60.4 NC_002794.1 + 182796 0.76 0.298862
Target:  5'- cAGCGCaCGGUcgCGGUCGACagCUCGUCCa -3'
miRNA:   3'- cUUGCG-GCCGa-GCCGGCUG--GAGCAGG- -5'
11101 5' -60.4 NC_002794.1 + 182066 0.66 0.795517
Target:  5'- aGGGCGCCuGCgucCGGUCGGCCacCG-CCa -3'
miRNA:   3'- -CUUGCGGcCGa--GCCGGCUGGa-GCaGG- -5'
11101 5' -60.4 NC_002794.1 + 181539 0.71 0.55142
Target:  5'- --cCGCCGGCg-GGCCGGCgcuCUCGgucgCCg -3'
miRNA:   3'- cuuGCGGCCGagCCGGCUG---GAGCa---GG- -5'
11101 5' -60.4 NC_002794.1 + 180887 0.7 0.560892
Target:  5'- -cGCGcCCGGuCUCGGCCGcggaCUCGgCCg -3'
miRNA:   3'- cuUGC-GGCC-GAGCCGGCug--GAGCaGG- -5'
11101 5' -60.4 NC_002794.1 + 180305 0.68 0.723733
Target:  5'- -cACGCCGGC-CGGCgCGACCa----- -3'
miRNA:   3'- cuUGCGGCCGaGCCG-GCUGGagcagg -5'
11101 5' -60.4 NC_002794.1 + 180019 0.66 0.803977
Target:  5'- cGACGaCGGCcgCGGCCGuCCgacccgcaucaCGUCCu -3'
miRNA:   3'- cUUGCgGCCGa-GCCGGCuGGa----------GCAGG- -5'
11101 5' -60.4 NC_002794.1 + 179124 0.66 0.828497
Target:  5'- cGGGCGCgCGG-UCGGUCGA--UCGUCUc -3'
miRNA:   3'- -CUUGCG-GCCgAGCCGGCUggAGCAGG- -5'
11101 5' -60.4 NC_002794.1 + 178291 0.7 0.574225
Target:  5'- cGAGCGaCGGCUCGacgcgggaggcgaacGCCGAaCCUCGUagagCCg -3'
miRNA:   3'- -CUUGCgGCCGAGC---------------CGGCU-GGAGCA----GG- -5'
11101 5' -60.4 NC_002794.1 + 177578 0.71 0.532629
Target:  5'- cGACGCCgugacucgaaGGCUCGGCgGAgCCUCGggUCg -3'
miRNA:   3'- cUUGCGG----------CCGAGCCGgCU-GGAGCa-GG- -5'
11101 5' -60.4 NC_002794.1 + 176605 0.71 0.55142
Target:  5'- aGAGCgGCCGGCaCGGCCauCCUCGUg- -3'
miRNA:   3'- -CUUG-CGGCCGaGCCGGcuGGAGCAgg -5'
11101 5' -60.4 NC_002794.1 + 156398 0.71 0.514073
Target:  5'- aGAGCgGCCGGCgccgCGGCCGcgGCCaCGgCCg -3'
miRNA:   3'- -CUUG-CGGCCGa---GCCGGC--UGGaGCaGG- -5'
11101 5' -60.4 NC_002794.1 + 156212 0.66 0.820474
Target:  5'- gGAGgGCCGGCgacUCcGCCGGCggcuccgcgCUCGUCg -3'
miRNA:   3'- -CUUgCGGCCG---AGcCGGCUG---------GAGCAGg -5'
11101 5' -60.4 NC_002794.1 + 155685 0.66 0.828497
Target:  5'- uGugGCagauCGGCUCGG-UGAUCgCGUCCa -3'
miRNA:   3'- cUugCG----GCCGAGCCgGCUGGaGCAGG- -5'
11101 5' -60.4 NC_002794.1 + 154327 0.66 0.806489
Target:  5'- cGGCGUCGGUcgucccgggugccgCGGCCGAgCUCccgcgcgGUCCa -3'
miRNA:   3'- cUUGCGGCCGa-------------GCCGGCUgGAG-------CAGG- -5'
11101 5' -60.4 NC_002794.1 + 154208 0.71 0.541998
Target:  5'- aGACGCUGGCgCGGCaaggcgugGACCUCGaguacuUCCa -3'
miRNA:   3'- cUUGCGGCCGaGCCGg-------CUGGAGC------AGG- -5'
11101 5' -60.4 NC_002794.1 + 153358 0.66 0.820474
Target:  5'- aGGACGCggccCGGCUgcgcgcccucgUGGUCGAUCU-GUCCg -3'
miRNA:   3'- -CUUGCG----GCCGA-----------GCCGGCUGGAgCAGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.