miRNA display CGI


Results 41 - 60 of 250 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11101 5' -60.4 NC_002794.1 + 151730 0.68 0.713422
Target:  5'- aGGACGUCG--UCGGCCGccggucgccucgcGCgCUCGUCCu -3'
miRNA:   3'- -CUUGCGGCcgAGCCGGC-------------UG-GAGCAGG- -5'
11101 5' -60.4 NC_002794.1 + 151509 0.7 0.570407
Target:  5'- -uGCGCuCGGUUCGGgUGGCCUgGUgCg -3'
miRNA:   3'- cuUGCG-GCCGAGCCgGCUGGAgCAgG- -5'
11101 5' -60.4 NC_002794.1 + 150609 0.71 0.504894
Target:  5'- cGGGCGCCGGCUCuGCgGGagCUCGUgagCCa -3'
miRNA:   3'- -CUUGCGGCCGAGcCGgCUg-GAGCA---GG- -5'
11101 5' -60.4 NC_002794.1 + 150338 0.69 0.657092
Target:  5'- uGGACGCaCGGCUgucugcucgucgCGGCCGAgaaCCUCcgcGUCUu -3'
miRNA:   3'- -CUUGCG-GCCGA------------GCCGGCU---GGAG---CAGG- -5'
11101 5' -60.4 NC_002794.1 + 150292 0.67 0.742256
Target:  5'- -cGCGCCGGUgugguggcagCGGaucaCCGGCCgCGUCUa -3'
miRNA:   3'- cuUGCGGCCGa---------GCC----GGCUGGaGCAGG- -5'
11101 5' -60.4 NC_002794.1 + 148432 0.71 0.55142
Target:  5'- -cACGCCGGCUCcuGGCUGGCgCUCuacuggccUCCg -3'
miRNA:   3'- cuUGCGGCCGAG--CCGGCUG-GAGc-------AGG- -5'
11101 5' -60.4 NC_002794.1 + 147320 0.7 0.599165
Target:  5'- --uCGUgCGGCUCuucggGGCCGAUCUCGUgCg -3'
miRNA:   3'- cuuGCG-GCCGAG-----CCGGCUGGAGCAgG- -5'
11101 5' -60.4 NC_002794.1 + 147002 0.7 0.58955
Target:  5'- cGACGUCGGCggcggCGGCCGccgGCgCUCGgUCUa -3'
miRNA:   3'- cUUGCGGCCGa----GCCGGC---UG-GAGC-AGG- -5'
11101 5' -60.4 NC_002794.1 + 146241 0.66 0.820474
Target:  5'- cGGCGUCGucaUCGucGUCGACCUCGUCg -3'
miRNA:   3'- cUUGCGGCcg-AGC--CGGCUGGAGCAGg -5'
11101 5' -60.4 NC_002794.1 + 145818 0.68 0.695441
Target:  5'- --cCGCCGGCggCGaGCCGAgCgCGUCg -3'
miRNA:   3'- cuuGCGGCCGa-GC-CGGCUgGaGCAGg -5'
11101 5' -60.4 NC_002794.1 + 145795 0.7 0.58955
Target:  5'- ---gGCCGGCUCGGaCGACgaCG-CCg -3'
miRNA:   3'- cuugCGGCCGAGCCgGCUGgaGCaGG- -5'
11101 5' -60.4 NC_002794.1 + 145681 0.67 0.742256
Target:  5'- cGACGUCGGUagaGGUCGAgCUCGaCCu -3'
miRNA:   3'- cUUGCGGCCGag-CCGGCUgGAGCaGG- -5'
11101 5' -60.4 NC_002794.1 + 145534 0.67 0.742256
Target:  5'- cGAGCGCCucgGGCgccccgagCGGcCCGACCg-GUUCg -3'
miRNA:   3'- -CUUGCGG---CCGa-------GCC-GGCUGGagCAGG- -5'
11101 5' -60.4 NC_002794.1 + 144768 0.68 0.70493
Target:  5'- gGAACGCa-GCU-GGCCGGCgUCG-CCg -3'
miRNA:   3'- -CUUGCGgcCGAgCCGGCUGgAGCaGG- -5'
11101 5' -60.4 NC_002794.1 + 143713 0.71 0.532629
Target:  5'- --cCGCgGGCccCGGCgGGCgUCGUCCu -3'
miRNA:   3'- cuuGCGgCCGa-GCCGgCUGgAGCAGG- -5'
11101 5' -60.4 NC_002794.1 + 142800 0.72 0.460141
Target:  5'- ---aGCCGcaGUUCGGCCGggucgGCCUCGUUCa -3'
miRNA:   3'- cuugCGGC--CGAGCCGGC-----UGGAGCAGG- -5'
11101 5' -60.4 NC_002794.1 + 141641 0.66 0.795517
Target:  5'- gGAAgGCCGGCgUGGCCGcgGCCg---CCg -3'
miRNA:   3'- -CUUgCGGCCGaGCCGGC--UGGagcaGG- -5'
11101 5' -60.4 NC_002794.1 + 138415 0.66 0.812298
Target:  5'- --uCGCCGGC-C-GCCGA-CUCGUCg -3'
miRNA:   3'- cuuGCGGCCGaGcCGGCUgGAGCAGg -5'
11101 5' -60.4 NC_002794.1 + 137606 0.68 0.695441
Target:  5'- --cCGCCGGCggucgCGGCggcggugcccaCGACgaCGUCCu -3'
miRNA:   3'- cuuGCGGCCGa----GCCG-----------GCUGgaGCAGG- -5'
11101 5' -60.4 NC_002794.1 + 137389 0.66 0.812298
Target:  5'- cGACGCgGGUcCGGuCUGuCCggCGUCCg -3'
miRNA:   3'- cUUGCGgCCGaGCC-GGCuGGa-GCAGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.