Results 1 - 20 of 250 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
11101 | 5' | -60.4 | NC_002794.1 | + | 110373 | 0.8 | 0.160268 |
Target: 5'- --uCGUCGGCucUCGGCCGcuCCUCGUCCg -3' miRNA: 3'- cuuGCGGCCG--AGCCGGCu-GGAGCAGG- -5' |
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11101 | 5' | -60.4 | NC_002794.1 | + | 193800 | 0.66 | 0.820474 |
Target: 5'- cGACGCCGGCgccCGcucgucuggcGCCGACg-CGUCg -3' miRNA: 3'- cUUGCGGCCGa--GC----------CGGCUGgaGCAGg -5' |
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11101 | 5' | -60.4 | NC_002794.1 | + | 156212 | 0.66 | 0.820474 |
Target: 5'- gGAGgGCCGGCgacUCcGCCGGCggcuccgcgCUCGUCg -3' miRNA: 3'- -CUUgCGGCCG---AGcCGGCUG---------GAGCAGg -5' |
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11101 | 5' | -60.4 | NC_002794.1 | + | 189388 | 0.66 | 0.820474 |
Target: 5'- --cCGCUGuGCUCGGCC-ACgUaGUCCg -3' miRNA: 3'- cuuGCGGC-CGAGCCGGcUGgAgCAGG- -5' |
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11101 | 5' | -60.4 | NC_002794.1 | + | 106038 | 0.66 | 0.820474 |
Target: 5'- --uCGCUGGaCgcgCGGCUGAaCUUCGUCa -3' miRNA: 3'- cuuGCGGCC-Ga--GCCGGCU-GGAGCAGg -5' |
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11101 | 5' | -60.4 | NC_002794.1 | + | 99592 | 0.66 | 0.820474 |
Target: 5'- aGGGCGCggcggcggcgCGcGCUCGcGCCG-CCUCGgccCCg -3' miRNA: 3'- -CUUGCG----------GC-CGAGC-CGGCuGGAGCa--GG- -5' |
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11101 | 5' | -60.4 | NC_002794.1 | + | 153358 | 0.66 | 0.820474 |
Target: 5'- aGGACGCggccCGGCUgcgcgcccucgUGGUCGAUCU-GUCCg -3' miRNA: 3'- -CUUGCG----GCCGA-----------GCCGGCUGGAgCAGG- -5' |
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11101 | 5' | -60.4 | NC_002794.1 | + | 19460 | 0.66 | 0.820474 |
Target: 5'- cGAGCGgCGGCggCGGCgGgACC-CG-CCg -3' miRNA: 3'- -CUUGCgGCCGa-GCCGgC-UGGaGCaGG- -5' |
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11101 | 5' | -60.4 | NC_002794.1 | + | 65233 | 0.66 | 0.819663 |
Target: 5'- cGGGCGgCGGUcgccgCGGCggcgaucCGGCCUCG-CCg -3' miRNA: 3'- -CUUGCgGCCGa----GCCG-------GCUGGAGCaGG- -5' |
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11101 | 5' | -60.4 | NC_002794.1 | + | 39041 | 0.66 | 0.823702 |
Target: 5'- --uCGCCGGgaCGGCgGGCaccacgugaaccagUCGUCCc -3' miRNA: 3'- cuuGCGGCCgaGCCGgCUGg-------------AGCAGG- -5' |
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11101 | 5' | -60.4 | NC_002794.1 | + | 146241 | 0.66 | 0.820474 |
Target: 5'- cGGCGUCGucaUCGucGUCGACCUCGUCg -3' miRNA: 3'- cUUGCGGCcg-AGC--CGGCUGGAGCAGg -5' |
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11101 | 5' | -60.4 | NC_002794.1 | + | 101489 | 0.66 | 0.828497 |
Target: 5'- aAACGCCGGCggcCGGuCCGAgCggugCGgcacacgCCg -3' miRNA: 3'- cUUGCGGCCGa--GCC-GGCUgGa---GCa------GG- -5' |
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11101 | 5' | -60.4 | NC_002794.1 | + | 133478 | 0.66 | 0.828497 |
Target: 5'- cGGGCGCgacucuUGGCUuucgCGG-CGACC-CGUCCg -3' miRNA: 3'- -CUUGCG------GCCGA----GCCgGCUGGaGCAGG- -5' |
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11101 | 5' | -60.4 | NC_002794.1 | + | 14713 | 0.66 | 0.828497 |
Target: 5'- gGAGCGCugcucgcggcuuCGGCUCGGgguCCGGCg-CGUCa -3' miRNA: 3'- -CUUGCG------------GCCGAGCC---GGCUGgaGCAGg -5' |
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11101 | 5' | -60.4 | NC_002794.1 | + | 89571 | 0.66 | 0.828497 |
Target: 5'- cGAGCGucCCGGUgucaUCGGCCGucgaGCCgcgCGaUCCc -3' miRNA: 3'- -CUUGC--GGCCG----AGCCGGC----UGGa--GC-AGG- -5' |
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11101 | 5' | -60.4 | NC_002794.1 | + | 11361 | 0.66 | 0.828497 |
Target: 5'- -cGCGCUGaGCUUucggcaaaaGCCGGCCUCGaCCc -3' miRNA: 3'- cuUGCGGC-CGAGc--------CGGCUGGAGCaGG- -5' |
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11101 | 5' | -60.4 | NC_002794.1 | + | 155685 | 0.66 | 0.828497 |
Target: 5'- uGugGCagauCGGCUCGG-UGAUCgCGUCCa -3' miRNA: 3'- cUugCG----GCCGAGCCgGCUGGaGCAGG- -5' |
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11101 | 5' | -60.4 | NC_002794.1 | + | 185580 | 0.66 | 0.828497 |
Target: 5'- aGGGCGCgCGGCUCucCCucCCUCuGUCCc -3' miRNA: 3'- -CUUGCG-GCCGAGccGGcuGGAG-CAGG- -5' |
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11101 | 5' | -60.4 | NC_002794.1 | + | 107252 | 0.66 | 0.828497 |
Target: 5'- cGGAC-CUGGCcCGGCgGAgCCgcgcCGUCCg -3' miRNA: 3'- -CUUGcGGCCGaGCCGgCU-GGa---GCAGG- -5' |
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11101 | 5' | -60.4 | NC_002794.1 | + | 65078 | 0.66 | 0.826106 |
Target: 5'- aAAC-CCGGCggCGGCUcgaugguccgaagaGACCUCGuggUCCg -3' miRNA: 3'- cUUGcGGCCGa-GCCGG--------------CUGGAGC---AGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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