miRNA display CGI


Results 1 - 20 of 23 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11102 3' -52.6 NC_002794.1 + 167744 0.66 0.991877
Target:  5'- uGCUgccUCGCGGuCCGGuGAGcUUUCUGa -3'
miRNA:   3'- -CGAgauAGUGCC-GGCC-CUC-AAAGACg -5'
11102 3' -52.6 NC_002794.1 + 105947 0.66 0.991877
Target:  5'- cGCgCUGUacgaACGGCUGGGGGccgCcGCg -3'
miRNA:   3'- -CGaGAUAg---UGCCGGCCCUCaaaGaCG- -5'
11102 3' -52.6 NC_002794.1 + 101583 0.66 0.990728
Target:  5'- gGC-Cgc-CGCGGCCGGGGGg----GCg -3'
miRNA:   3'- -CGaGauaGUGCCGGCCCUCaaagaCG- -5'
11102 3' -52.6 NC_002794.1 + 14086 0.66 0.989454
Target:  5'- aGCUUUGuccUCACGGUCGGGucuAGUUacuacgacuaUCgGCu -3'
miRNA:   3'- -CGAGAU---AGUGCCGGCCC---UCAA----------AGaCG- -5'
11102 3' -52.6 NC_002794.1 + 120723 0.67 0.984803
Target:  5'- cGUUCUucGUCgugggcacgGCGGuCCGGGAGcgcagacUCUGCu -3'
miRNA:   3'- -CGAGA--UAG---------UGCC-GGCCCUCaa-----AGACG- -5'
11102 3' -52.6 NC_002794.1 + 13333 0.67 0.984803
Target:  5'- cGCUCcc-C-CGGUCGGGGGUggCgGCg -3'
miRNA:   3'- -CGAGauaGuGCCGGCCCUCAaaGaCG- -5'
11102 3' -52.6 NC_002794.1 + 124879 0.67 0.984445
Target:  5'- aGCUCggcgugcgugCACGGCCaGGAGcuggUCcGCg -3'
miRNA:   3'- -CGAGaua-------GUGCCGGcCCUCaa--AGaCG- -5'
11102 3' -52.6 NC_002794.1 + 128533 0.67 0.982949
Target:  5'- gGCUCUGg-ACGGUCGGGuGcgccgucCUGCu -3'
miRNA:   3'- -CGAGAUagUGCCGGCCCuCaaa----GACG- -5'
11102 3' -52.6 NC_002794.1 + 112172 0.67 0.982949
Target:  5'- gGCUCUG-CGCGGCCagcaGGuugucGAGguacgUCUGCc -3'
miRNA:   3'- -CGAGAUaGUGCCGG----CC-----CUCaa---AGACG- -5'
11102 3' -52.6 NC_002794.1 + 187 0.67 0.978735
Target:  5'- cGCUCUcgCacacacgccaACGGCCGGGGGgaggggGUc -3'
miRNA:   3'- -CGAGAuaG----------UGCCGGCCCUCaaaga-CG- -5'
11102 3' -52.6 NC_002794.1 + 70691 0.67 0.978735
Target:  5'- cGUcCUGUCGCcGCUGGGGGUcccacccaCUGCg -3'
miRNA:   3'- -CGaGAUAGUGcCGGCCCUCAaa------GACG- -5'
11102 3' -52.6 NC_002794.1 + 113535 0.67 0.976605
Target:  5'- gGCUCggcGUCGcCGGCCcGGAGcaggcgccggaccgUCUGCg -3'
miRNA:   3'- -CGAGa--UAGU-GCCGGcCCUCaa------------AGACG- -5'
11102 3' -52.6 NC_002794.1 + 183852 0.67 0.976359
Target:  5'- gGCUCUccGUCGCGGCCGucGGGGccaCcGCc -3'
miRNA:   3'- -CGAGA--UAGUGCCGGC--CCUCaaaGaCG- -5'
11102 3' -52.6 NC_002794.1 + 109034 0.68 0.973795
Target:  5'- aGCUCUGUCagaACGucuaCCGGGAGac-CUGUg -3'
miRNA:   3'- -CGAGAUAG---UGCc---GGCCCUCaaaGACG- -5'
11102 3' -52.6 NC_002794.1 + 22595 0.68 0.973795
Target:  5'- cGCUCgg-CACGGUCGGGAcgcUCgaGCc -3'
miRNA:   3'- -CGAGauaGUGCCGGCCCUcaaAGa-CG- -5'
11102 3' -52.6 NC_002794.1 + 100754 0.69 0.950013
Target:  5'- cGCgUCUAUCGCuGGCCGgucgcGGAGUacacgcgcCUGCg -3'
miRNA:   3'- -CG-AGAUAGUG-CCGGC-----CCUCAaa------GACG- -5'
11102 3' -52.6 NC_002794.1 + 685 0.7 0.920692
Target:  5'- uGUUCU-UCGCGGCCG-GAGUcggCUGUu -3'
miRNA:   3'- -CGAGAuAGUGCCGGCcCUCAaa-GACG- -5'
11102 3' -52.6 NC_002794.1 + 98926 0.7 0.909004
Target:  5'- aGCgggCUGggCGCGGCCGGGaAGgggCUGg -3'
miRNA:   3'- -CGa--GAUa-GUGCCGGCCC-UCaaaGACg -5'
11102 3' -52.6 NC_002794.1 + 81399 0.71 0.889702
Target:  5'- gGCUCcgGUCcCGGCuCGGGAG---CUGCu -3'
miRNA:   3'- -CGAGa-UAGuGCCG-GCCCUCaaaGACG- -5'
11102 3' -52.6 NC_002794.1 + 121978 0.72 0.871315
Target:  5'- gGCUCggucccgccgagCGCGGCCGGGAG---CUGUu -3'
miRNA:   3'- -CGAGaua---------GUGCCGGCCCUCaaaGACG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.