miRNA display CGI


Results 1 - 20 of 51 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11102 5' -60.7 NC_002794.1 + 84159 0.66 0.791138
Target:  5'- cGGCGcCuCCUCUCGGcccaGCGCucGGCc -3'
miRNA:   3'- aCCGCaG-GGAGAGCCac--CGCGucUCG- -5'
11102 5' -60.7 NC_002794.1 + 78310 0.66 0.782398
Target:  5'- cUGGCucucgCCCUCUCcc-GGCGCGacGGGCg -3'
miRNA:   3'- -ACCGca---GGGAGAGccaCCGCGU--CUCG- -5'
11102 5' -60.7 NC_002794.1 + 156077 0.66 0.782398
Target:  5'- gGGCGUuggCCCa--CGGUGGCGUAGcgaacGCu -3'
miRNA:   3'- aCCGCA---GGGagaGCCACCGCGUCu----CG- -5'
11102 5' -60.7 NC_002794.1 + 145202 0.66 0.781517
Target:  5'- cGGCGgCCCUC-CGGcagcgcuccuucgUGGUGuCGGAGg -3'
miRNA:   3'- aCCGCaGGGAGaGCC-------------ACCGC-GUCUCg -5'
11102 5' -60.7 NC_002794.1 + 137457 0.66 0.773535
Target:  5'- cGGCGgaauccgCCgUgUCGGcGGCcucGUAGAGCa -3'
miRNA:   3'- aCCGCa------GGgAgAGCCaCCG---CGUCUCG- -5'
11102 5' -60.7 NC_002794.1 + 141275 0.66 0.773535
Target:  5'- cGGgGUCCCUCgaccCGuuuagccacacGUGGCGCGccGGCg -3'
miRNA:   3'- aCCgCAGGGAGa---GC-----------CACCGCGUc-UCG- -5'
11102 5' -60.7 NC_002794.1 + 68926 0.66 0.773535
Target:  5'- cGGCGUCCUcgUCgcccgCGGgccgcGGCGCc-GGCg -3'
miRNA:   3'- aCCGCAGGG--AGa----GCCa----CCGCGucUCG- -5'
11102 5' -60.7 NC_002794.1 + 187465 0.66 0.773535
Target:  5'- cGGCGUCg--CUCGGcGcGCGCcGGGCc -3'
miRNA:   3'- aCCGCAGggaGAGCCaC-CGCGuCUCG- -5'
11102 5' -60.7 NC_002794.1 + 180082 0.66 0.773535
Target:  5'- cGGCGga-CgguaUCGGU-GCGCAGGGCu -3'
miRNA:   3'- aCCGCaggGag--AGCCAcCGCGUCUCG- -5'
11102 5' -60.7 NC_002794.1 + 113796 0.66 0.768162
Target:  5'- gGGCG-CgCUCUCGGUccucgccuucgcggcGGCGCucGGCc -3'
miRNA:   3'- aCCGCaGgGAGAGCCA---------------CCGCGucUCG- -5'
11102 5' -60.7 NC_002794.1 + 18078 0.66 0.764558
Target:  5'- --cUGUgCgUgUCGGUGGCGCAGAagGCg -3'
miRNA:   3'- accGCAgGgAgAGCCACCGCGUCU--CG- -5'
11102 5' -60.7 NC_002794.1 + 21891 0.66 0.764558
Target:  5'- gGGUGUCCgCggccugCgUCGGUGGUggcgGCGGAGa -3'
miRNA:   3'- aCCGCAGG-Ga-----G-AGCCACCG----CGUCUCg -5'
11102 5' -60.7 NC_002794.1 + 94035 0.66 0.764558
Target:  5'- cGGCGggCCCgagagCggCGGcGGUGCGGGGg -3'
miRNA:   3'- aCCGCa-GGGa----Ga-GCCaCCGCGUCUCg -5'
11102 5' -60.7 NC_002794.1 + 112347 0.66 0.764558
Target:  5'- cGGCGgcgCCggCggCGG-GGCGgGGAGCu -3'
miRNA:   3'- aCCGCa--GGgaGa-GCCaCCGCgUCUCG- -5'
11102 5' -60.7 NC_002794.1 + 126145 0.66 0.74629
Target:  5'- cUGGCcggCCCUCUgggacgCGGUcuacGCGCAGAGg -3'
miRNA:   3'- -ACCGca-GGGAGA------GCCAc---CGCGUCUCg -5'
11102 5' -60.7 NC_002794.1 + 37739 0.66 0.74629
Target:  5'- cGGCGcCgCCgg-CGGcGGCGCGGcGGCg -3'
miRNA:   3'- aCCGCaG-GGagaGCCaCCGCGUC-UCG- -5'
11102 5' -60.7 NC_002794.1 + 143279 0.67 0.737016
Target:  5'- cGGCGccggCCgCUCggggUCGGgcgGGUGCAGcGCg -3'
miRNA:   3'- aCCGCa---GG-GAG----AGCCa--CCGCGUCuCG- -5'
11102 5' -60.7 NC_002794.1 + 130445 0.67 0.737016
Target:  5'- aGGCGUCCgUgUUGGgcggcgaGGCGCuG-GCg -3'
miRNA:   3'- aCCGCAGGgAgAGCCa------CCGCGuCuCG- -5'
11102 5' -60.7 NC_002794.1 + 193806 0.67 0.737016
Target:  5'- cGGCG-CCCgCUCGucUGGCGCcGAcGCg -3'
miRNA:   3'- aCCGCaGGGaGAGCc-ACCGCGuCU-CG- -5'
11102 5' -60.7 NC_002794.1 + 149257 0.67 0.727659
Target:  5'- cGGCGccaccaCCCUCguccccgcCGGcGGCGCGGcGGCu -3'
miRNA:   3'- aCCGCa-----GGGAGa-------GCCaCCGCGUC-UCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.