Results 21 - 40 of 51 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
11102 | 5' | -60.7 | NC_002794.1 | + | 4359 | 0.67 | 0.718226 |
Target: 5'- gUGGCGUCCCcccucuagcucUUUCGGUGuCGguGAc- -3' miRNA: 3'- -ACCGCAGGG-----------AGAGCCACcGCguCUcg -5' |
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11102 | 5' | -60.7 | NC_002794.1 | + | 119245 | 0.67 | 0.718226 |
Target: 5'- gGaGCGUgUCCUCggCGGcGGCGUAGuGCu -3' miRNA: 3'- aC-CGCA-GGGAGa-GCCaCCGCGUCuCG- -5' |
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11102 | 5' | -60.7 | NC_002794.1 | + | 175560 | 0.67 | 0.725778 |
Target: 5'- uUGGCGaCCCguuggaaacccgC-CGGUGGUGUcaguGGAGCu -3' miRNA: 3'- -ACCGCaGGGa-----------GaGCCACCGCG----UCUCG- -5' |
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11102 | 5' | -60.7 | NC_002794.1 | + | 193806 | 0.67 | 0.737016 |
Target: 5'- cGGCG-CCCgCUCGucUGGCGCcGAcGCg -3' miRNA: 3'- aCCGCaGGGaGAGCc-ACCGCGuCU-CG- -5' |
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11102 | 5' | -60.7 | NC_002794.1 | + | 149257 | 0.67 | 0.727659 |
Target: 5'- cGGCGccaccaCCCUCguccccgcCGGcGGCGCGGcGGCu -3' miRNA: 3'- aCCGCa-----GGGAGa-------GCCaCCGCGUC-UCG- -5' |
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11102 | 5' | -60.7 | NC_002794.1 | + | 130445 | 0.67 | 0.737016 |
Target: 5'- aGGCGUCCgUgUUGGgcggcgaGGCGCuG-GCg -3' miRNA: 3'- aCCGCAGGgAgAGCCa------CCGCGuCuCG- -5' |
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11102 | 5' | -60.7 | NC_002794.1 | + | 143279 | 0.67 | 0.737016 |
Target: 5'- cGGCGccggCCgCUCggggUCGGgcgGGUGCAGcGCg -3' miRNA: 3'- aCCGCa---GG-GAG----AGCCa--CCGCGUCuCG- -5' |
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11102 | 5' | -60.7 | NC_002794.1 | + | 84892 | 0.68 | 0.659529 |
Target: 5'- gGGCuguGUgCCUCgcugcccauggguUCGGaacccGGCGCGGAGCg -3' miRNA: 3'- aCCG---CAgGGAG-------------AGCCa----CCGCGUCUCG- -5' |
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11102 | 5' | -60.7 | NC_002794.1 | + | 53906 | 0.68 | 0.660502 |
Target: 5'- cGGCGUCCUcgUCgccgUCGGcGGCGCcgccgaaccGAGCu -3' miRNA: 3'- aCCGCAGGG--AG----AGCCaCCGCGu--------CUCG- -5' |
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11102 | 5' | -60.7 | NC_002794.1 | + | 38621 | 0.68 | 0.679907 |
Target: 5'- gGcGCGUCCCgaCUCGccGGUGCGGcGCg -3' miRNA: 3'- aC-CGCAGGGa-GAGCcaCCGCGUCuCG- -5' |
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11102 | 5' | -60.7 | NC_002794.1 | + | 123771 | 0.68 | 0.670218 |
Target: 5'- gGGCGUggaCgCCUCcguguuggaggCGGUGGCGCcguucgGGGGCg -3' miRNA: 3'- aCCGCA---G-GGAGa----------GCCACCGCG------UCUCG- -5' |
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11102 | 5' | -60.7 | NC_002794.1 | + | 110430 | 0.68 | 0.670218 |
Target: 5'- gGGCGgcugUCgUCgUCGGUGGCGgAGgccGGCg -3' miRNA: 3'- aCCGCa---GGgAG-AGCCACCGCgUC---UCG- -5' |
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11102 | 5' | -60.7 | NC_002794.1 | + | 96859 | 0.68 | 0.679907 |
Target: 5'- aGGCcaccGUCguguCCUCgacggaCGGUGGCGCuacGGGGCa -3' miRNA: 3'- aCCG----CAG----GGAGa-----GCCACCGCG---UCUCG- -5' |
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11102 | 5' | -60.7 | NC_002794.1 | + | 189559 | 0.69 | 0.602016 |
Target: 5'- aUGGCgGUCCCgCUCGGUcGGCcgGCccGGGCc -3' miRNA: 3'- -ACCG-CAGGGaGAGCCA-CCG--CGu-CUCG- -5' |
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11102 | 5' | -60.7 | NC_002794.1 | + | 131877 | 0.69 | 0.602016 |
Target: 5'- gGGCGccgcggCCUcaUCUCGGUcGCGCGcGGGCa -3' miRNA: 3'- aCCGCa-----GGG--AGAGCCAcCGCGU-CUCG- -5' |
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11102 | 5' | -60.7 | NC_002794.1 | + | 143102 | 0.7 | 0.534766 |
Target: 5'- cGGCGUguuccagcCCCgCUCGGccgUGGCGCAGGu- -3' miRNA: 3'- aCCGCA--------GGGaGAGCC---ACCGCGUCUcg -5' |
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11102 | 5' | -60.7 | NC_002794.1 | + | 119107 | 0.7 | 0.563338 |
Target: 5'- gGGCGUCCagaUCGG-GGaCGCAGAagGCc -3' miRNA: 3'- aCCGCAGGgagAGCCaCC-GCGUCU--CG- -5' |
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11102 | 5' | -60.7 | NC_002794.1 | + | 126930 | 0.71 | 0.488379 |
Target: 5'- gUGGUGUCCuCUCUUGccauUGGUGCGuuuGAGCg -3' miRNA: 3'- -ACCGCAGG-GAGAGCc---ACCGCGU---CUCG- -5' |
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11102 | 5' | -60.7 | NC_002794.1 | + | 116941 | 0.71 | 0.461468 |
Target: 5'- cGGCGUCCCcggCGGcGGCGUcggcGGGCg -3' miRNA: 3'- aCCGCAGGGagaGCCaCCGCGu---CUCG- -5' |
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11102 | 5' | -60.7 | NC_002794.1 | + | 19986 | 0.71 | 0.452673 |
Target: 5'- gGGCuGUCCgUCcUGGUGGCGCuGcGCa -3' miRNA: 3'- aCCG-CAGGgAGaGCCACCGCGuCuCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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