miRNA display CGI


Results 1 - 20 of 51 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11102 5' -60.7 NC_002794.1 + 119496 0.75 0.298532
Target:  5'- -uGCGUCCUcggggUCgUCGGcGGCGCGGAGCc -3'
miRNA:   3'- acCGCAGGG-----AG-AGCCaCCGCGUCUCG- -5'
11102 5' -60.7 NC_002794.1 + 141324 0.74 0.340155
Target:  5'- cGGCGUCgg-CUCGGUGGCGagcgaagacgAGAGCa -3'
miRNA:   3'- aCCGCAGggaGAGCCACCGCg---------UCUCG- -5'
11102 5' -60.7 NC_002794.1 + 37874 0.73 0.354933
Target:  5'- cGGCGUCUCgggCggcgggggCGGUGGCGgCGGcAGCg -3'
miRNA:   3'- aCCGCAGGGa--Ga-------GCCACCGC-GUC-UCG- -5'
11102 5' -60.7 NC_002794.1 + 115334 0.73 0.36249
Target:  5'- cGGCGUCCgggccgCUCGGcacguccaGGCGaCAGAGCg -3'
miRNA:   3'- aCCGCAGGga----GAGCCa-------CCGC-GUCUCG- -5'
11102 5' -60.7 NC_002794.1 + 89852 0.73 0.370158
Target:  5'- cGGcCGUCCCuuUCUCGGUuggcuuGGCGCcuGGCg -3'
miRNA:   3'- aCC-GCAGGG--AGAGCCA------CCGCGucUCG- -5'
11102 5' -60.7 NC_002794.1 + 100459 0.73 0.385823
Target:  5'- cGGCGgcgCCUUCcCGGUGGCGgAGAa- -3'
miRNA:   3'- aCCGCa--GGGAGaGCCACCGCgUCUcg -5'
11102 5' -60.7 NC_002794.1 + 92257 0.73 0.385823
Target:  5'- cGGCGUCgCUggCGGcGGCGCcGGGCg -3'
miRNA:   3'- aCCGCAGgGAgaGCCaCCGCGuCUCG- -5'
11102 5' -60.7 NC_002794.1 + 91037 0.72 0.410127
Target:  5'- gGGCGgCCCUCggGGUGGa-CGGGGCg -3'
miRNA:   3'- aCCGCaGGGAGagCCACCgcGUCUCG- -5'
11102 5' -60.7 NC_002794.1 + 145377 0.72 0.410127
Target:  5'- gGGCGgagacgCUCcgCUCGGUGGCGCGccGCg -3'
miRNA:   3'- aCCGCa-----GGGa-GAGCCACCGCGUcuCG- -5'
11102 5' -60.7 NC_002794.1 + 142906 0.72 0.443969
Target:  5'- cGGCGU-CCUC-CGGgGGC-CGGAGCa -3'
miRNA:   3'- aCCGCAgGGAGaGCCaCCGcGUCUCG- -5'
11102 5' -60.7 NC_002794.1 + 19986 0.71 0.452673
Target:  5'- gGGCuGUCCgUCcUGGUGGCGCuGcGCa -3'
miRNA:   3'- aCCG-CAGGgAGaGCCACCGCGuCuCG- -5'
11102 5' -60.7 NC_002794.1 + 116941 0.71 0.461468
Target:  5'- cGGCGUCCCcggCGGcGGCGUcggcGGGCg -3'
miRNA:   3'- aCCGCAGGGagaGCCaCCGCGu---CUCG- -5'
11102 5' -60.7 NC_002794.1 + 126930 0.71 0.488379
Target:  5'- gUGGUGUCCuCUCUUGccauUGGUGCGuuuGAGCg -3'
miRNA:   3'- -ACCGCAGG-GAGAGCc---ACCGCGU---CUCG- -5'
11102 5' -60.7 NC_002794.1 + 113581 0.71 0.497513
Target:  5'- cGGCGUCCUgcaCGacGGCGCGGAGUu -3'
miRNA:   3'- aCCGCAGGGagaGCcaCCGCGUCUCG- -5'
11102 5' -60.7 NC_002794.1 + 143102 0.7 0.534766
Target:  5'- cGGCGUguuccagcCCCgCUCGGccgUGGCGCAGGu- -3'
miRNA:   3'- aCCGCA--------GGGaGAGCC---ACCGCGUCUcg -5'
11102 5' -60.7 NC_002794.1 + 119107 0.7 0.563338
Target:  5'- gGGCGUCCagaUCGG-GGaCGCAGAagGCc -3'
miRNA:   3'- aCCGCAGGgagAGCCaCC-GCGUCU--CG- -5'
11102 5' -60.7 NC_002794.1 + 131877 0.69 0.602016
Target:  5'- gGGCGccgcggCCUcaUCUCGGUcGCGCGcGGGCa -3'
miRNA:   3'- aCCGCa-----GGG--AGAGCCAcCGCGU-CUCG- -5'
11102 5' -60.7 NC_002794.1 + 189559 0.69 0.602016
Target:  5'- aUGGCgGUCCCgCUCGGUcGGCcgGCccGGGCc -3'
miRNA:   3'- -ACCG-CAGGGaGAGCCA-CCG--CGu-CUCG- -5'
11102 5' -60.7 NC_002794.1 + 84892 0.68 0.659529
Target:  5'- gGGCuguGUgCCUCgcugcccauggguUCGGaacccGGCGCGGAGCg -3'
miRNA:   3'- aCCG---CAgGGAG-------------AGCCa----CCGCGUCUCG- -5'
11102 5' -60.7 NC_002794.1 + 53906 0.68 0.660502
Target:  5'- cGGCGUCCUcgUCgccgUCGGcGGCGCcgccgaaccGAGCu -3'
miRNA:   3'- aCCGCAGGG--AG----AGCCaCCGCGu--------CUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.