miRNA display CGI


Results 21 - 40 of 51 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11102 5' -60.7 NC_002794.1 + 110430 0.68 0.670218
Target:  5'- gGGCGgcugUCgUCgUCGGUGGCGgAGgccGGCg -3'
miRNA:   3'- aCCGCa---GGgAG-AGCCACCGCgUC---UCG- -5'
11102 5' -60.7 NC_002794.1 + 123771 0.68 0.670218
Target:  5'- gGGCGUggaCgCCUCcguguuggaggCGGUGGCGCcguucgGGGGCg -3'
miRNA:   3'- aCCGCA---G-GGAGa----------GCCACCGCG------UCUCG- -5'
11102 5' -60.7 NC_002794.1 + 38621 0.68 0.679907
Target:  5'- gGcGCGUCCCgaCUCGccGGUGCGGcGCg -3'
miRNA:   3'- aC-CGCAGGGa-GAGCcaCCGCGUCuCG- -5'
11102 5' -60.7 NC_002794.1 + 96859 0.68 0.679907
Target:  5'- aGGCcaccGUCguguCCUCgacggaCGGUGGCGCuacGGGGCa -3'
miRNA:   3'- aCCG----CAG----GGAGa-----GCCACCGCG---UCUCG- -5'
11102 5' -60.7 NC_002794.1 + 87372 0.67 0.699169
Target:  5'- cGGCGUUCUgggCGGcgcGGC-CAGAGCg -3'
miRNA:   3'- aCCGCAGGGagaGCCa--CCGcGUCUCG- -5'
11102 5' -60.7 NC_002794.1 + 26653 0.67 0.708727
Target:  5'- cGGCGgCCggCUCgUCGGcGGgGUGGAGCg -3'
miRNA:   3'- aCCGCaGG--GAG-AGCCaCCgCGUCUCG- -5'
11102 5' -60.7 NC_002794.1 + 184641 0.67 0.708727
Target:  5'- cGGCGUCgCg-UCGGcGGCGUAGcaacGGCu -3'
miRNA:   3'- aCCGCAGgGagAGCCaCCGCGUC----UCG- -5'
11102 5' -60.7 NC_002794.1 + 99561 0.67 0.718226
Target:  5'- cGcGCG-CCCUCcgCGGgcgaggggGGUGCGGAGg -3'
miRNA:   3'- aC-CGCaGGGAGa-GCCa-------CCGCGUCUCg -5'
11102 5' -60.7 NC_002794.1 + 4359 0.67 0.718226
Target:  5'- gUGGCGUCCCcccucuagcucUUUCGGUGuCGguGAc- -3'
miRNA:   3'- -ACCGCAGGG-----------AGAGCCACcGCguCUcg -5'
11102 5' -60.7 NC_002794.1 + 119245 0.67 0.718226
Target:  5'- gGaGCGUgUCCUCggCGGcGGCGUAGuGCu -3'
miRNA:   3'- aC-CGCA-GGGAGa-GCCaCCGCGUCuCG- -5'
11102 5' -60.7 NC_002794.1 + 175560 0.67 0.725778
Target:  5'- uUGGCGaCCCguuggaaacccgC-CGGUGGUGUcaguGGAGCu -3'
miRNA:   3'- -ACCGCaGGGa-----------GaGCCACCGCG----UCUCG- -5'
11102 5' -60.7 NC_002794.1 + 149257 0.67 0.727659
Target:  5'- cGGCGccaccaCCCUCguccccgcCGGcGGCGCGGcGGCu -3'
miRNA:   3'- aCCGCa-----GGGAGa-------GCCaCCGCGUC-UCG- -5'
11102 5' -60.7 NC_002794.1 + 143279 0.67 0.737016
Target:  5'- cGGCGccggCCgCUCggggUCGGgcgGGUGCAGcGCg -3'
miRNA:   3'- aCCGCa---GG-GAG----AGCCa--CCGCGUCuCG- -5'
11102 5' -60.7 NC_002794.1 + 130445 0.67 0.737016
Target:  5'- aGGCGUCCgUgUUGGgcggcgaGGCGCuG-GCg -3'
miRNA:   3'- aCCGCAGGgAgAGCCa------CCGCGuCuCG- -5'
11102 5' -60.7 NC_002794.1 + 193806 0.67 0.737016
Target:  5'- cGGCG-CCCgCUCGucUGGCGCcGAcGCg -3'
miRNA:   3'- aCCGCaGGGaGAGCc-ACCGCGuCU-CG- -5'
11102 5' -60.7 NC_002794.1 + 37739 0.66 0.74629
Target:  5'- cGGCGcCgCCgg-CGGcGGCGCGGcGGCg -3'
miRNA:   3'- aCCGCaG-GGagaGCCaCCGCGUC-UCG- -5'
11102 5' -60.7 NC_002794.1 + 126145 0.66 0.74629
Target:  5'- cUGGCcggCCCUCUgggacgCGGUcuacGCGCAGAGg -3'
miRNA:   3'- -ACCGca-GGGAGA------GCCAc---CGCGUCUCg -5'
11102 5' -60.7 NC_002794.1 + 18078 0.66 0.764558
Target:  5'- --cUGUgCgUgUCGGUGGCGCAGAagGCg -3'
miRNA:   3'- accGCAgGgAgAGCCACCGCGUCU--CG- -5'
11102 5' -60.7 NC_002794.1 + 21891 0.66 0.764558
Target:  5'- gGGUGUCCgCggccugCgUCGGUGGUggcgGCGGAGa -3'
miRNA:   3'- aCCGCAGG-Ga-----G-AGCCACCG----CGUCUCg -5'
11102 5' -60.7 NC_002794.1 + 94035 0.66 0.764558
Target:  5'- cGGCGggCCCgagagCggCGGcGGUGCGGGGg -3'
miRNA:   3'- aCCGCa-GGGa----Ga-GCCaCCGCGUCUCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.