miRNA display CGI


Results 41 - 51 of 51 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11102 5' -60.7 NC_002794.1 + 18078 0.66 0.764558
Target:  5'- --cUGUgCgUgUCGGUGGCGCAGAagGCg -3'
miRNA:   3'- accGCAgGgAgAGCCACCGCGUCU--CG- -5'
11102 5' -60.7 NC_002794.1 + 113796 0.66 0.768162
Target:  5'- gGGCG-CgCUCUCGGUccucgccuucgcggcGGCGCucGGCc -3'
miRNA:   3'- aCCGCaGgGAGAGCCA---------------CCGCGucUCG- -5'
11102 5' -60.7 NC_002794.1 + 187465 0.66 0.773535
Target:  5'- cGGCGUCg--CUCGGcGcGCGCcGGGCc -3'
miRNA:   3'- aCCGCAGggaGAGCCaC-CGCGuCUCG- -5'
11102 5' -60.7 NC_002794.1 + 68926 0.66 0.773535
Target:  5'- cGGCGUCCUcgUCgcccgCGGgccgcGGCGCc-GGCg -3'
miRNA:   3'- aCCGCAGGG--AGa----GCCa----CCGCGucUCG- -5'
11102 5' -60.7 NC_002794.1 + 141275 0.66 0.773535
Target:  5'- cGGgGUCCCUCgaccCGuuuagccacacGUGGCGCGccGGCg -3'
miRNA:   3'- aCCgCAGGGAGa---GC-----------CACCGCGUc-UCG- -5'
11102 5' -60.7 NC_002794.1 + 137457 0.66 0.773535
Target:  5'- cGGCGgaauccgCCgUgUCGGcGGCcucGUAGAGCa -3'
miRNA:   3'- aCCGCa------GGgAgAGCCaCCG---CGUCUCG- -5'
11102 5' -60.7 NC_002794.1 + 180082 0.66 0.773535
Target:  5'- cGGCGga-CgguaUCGGU-GCGCAGGGCu -3'
miRNA:   3'- aCCGCaggGag--AGCCAcCGCGUCUCG- -5'
11102 5' -60.7 NC_002794.1 + 145202 0.66 0.781517
Target:  5'- cGGCGgCCCUC-CGGcagcgcuccuucgUGGUGuCGGAGg -3'
miRNA:   3'- aCCGCaGGGAGaGCC-------------ACCGC-GUCUCg -5'
11102 5' -60.7 NC_002794.1 + 78310 0.66 0.782398
Target:  5'- cUGGCucucgCCCUCUCcc-GGCGCGacGGGCg -3'
miRNA:   3'- -ACCGca---GGGAGAGccaCCGCGU--CUCG- -5'
11102 5' -60.7 NC_002794.1 + 156077 0.66 0.782398
Target:  5'- gGGCGUuggCCCa--CGGUGGCGUAGcgaacGCu -3'
miRNA:   3'- aCCGCA---GGGagaGCCACCGCGUCu----CG- -5'
11102 5' -60.7 NC_002794.1 + 84159 0.66 0.791138
Target:  5'- cGGCGcCuCCUCUCGGcccaGCGCucGGCc -3'
miRNA:   3'- aCCGCaG-GGAGAGCCac--CGCGucUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.