Results 21 - 40 of 51 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
11102 | 5' | -60.7 | NC_002794.1 | + | 100459 | 0.73 | 0.385823 |
Target: 5'- cGGCGgcgCCUUCcCGGUGGCGgAGAa- -3' miRNA: 3'- aCCGCa--GGGAGaGCCACCGCgUCUcg -5' |
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11102 | 5' | -60.7 | NC_002794.1 | + | 110430 | 0.68 | 0.670218 |
Target: 5'- gGGCGgcugUCgUCgUCGGUGGCGgAGgccGGCg -3' miRNA: 3'- aCCGCa---GGgAG-AGCCACCGCgUC---UCG- -5' |
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11102 | 5' | -60.7 | NC_002794.1 | + | 112347 | 0.66 | 0.764558 |
Target: 5'- cGGCGgcgCCggCggCGG-GGCGgGGAGCu -3' miRNA: 3'- aCCGCa--GGgaGa-GCCaCCGCgUCUCG- -5' |
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11102 | 5' | -60.7 | NC_002794.1 | + | 113581 | 0.71 | 0.497513 |
Target: 5'- cGGCGUCCUgcaCGacGGCGCGGAGUu -3' miRNA: 3'- aCCGCAGGGagaGCcaCCGCGUCUCG- -5' |
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11102 | 5' | -60.7 | NC_002794.1 | + | 113796 | 0.66 | 0.768162 |
Target: 5'- gGGCG-CgCUCUCGGUccucgccuucgcggcGGCGCucGGCc -3' miRNA: 3'- aCCGCaGgGAGAGCCA---------------CCGCGucUCG- -5' |
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11102 | 5' | -60.7 | NC_002794.1 | + | 115334 | 0.73 | 0.36249 |
Target: 5'- cGGCGUCCgggccgCUCGGcacguccaGGCGaCAGAGCg -3' miRNA: 3'- aCCGCAGGga----GAGCCa-------CCGC-GUCUCG- -5' |
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11102 | 5' | -60.7 | NC_002794.1 | + | 116941 | 0.71 | 0.461468 |
Target: 5'- cGGCGUCCCcggCGGcGGCGUcggcGGGCg -3' miRNA: 3'- aCCGCAGGGagaGCCaCCGCGu---CUCG- -5' |
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11102 | 5' | -60.7 | NC_002794.1 | + | 119107 | 0.7 | 0.563338 |
Target: 5'- gGGCGUCCagaUCGG-GGaCGCAGAagGCc -3' miRNA: 3'- aCCGCAGGgagAGCCaCC-GCGUCU--CG- -5' |
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11102 | 5' | -60.7 | NC_002794.1 | + | 119245 | 0.67 | 0.718226 |
Target: 5'- gGaGCGUgUCCUCggCGGcGGCGUAGuGCu -3' miRNA: 3'- aC-CGCA-GGGAGa-GCCaCCGCGUCuCG- -5' |
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11102 | 5' | -60.7 | NC_002794.1 | + | 119496 | 0.75 | 0.298532 |
Target: 5'- -uGCGUCCUcggggUCgUCGGcGGCGCGGAGCc -3' miRNA: 3'- acCGCAGGG-----AG-AGCCaCCGCGUCUCG- -5' |
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11102 | 5' | -60.7 | NC_002794.1 | + | 123771 | 0.68 | 0.670218 |
Target: 5'- gGGCGUggaCgCCUCcguguuggaggCGGUGGCGCcguucgGGGGCg -3' miRNA: 3'- aCCGCA---G-GGAGa----------GCCACCGCG------UCUCG- -5' |
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11102 | 5' | -60.7 | NC_002794.1 | + | 126145 | 0.66 | 0.74629 |
Target: 5'- cUGGCcggCCCUCUgggacgCGGUcuacGCGCAGAGg -3' miRNA: 3'- -ACCGca-GGGAGA------GCCAc---CGCGUCUCg -5' |
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11102 | 5' | -60.7 | NC_002794.1 | + | 126930 | 0.71 | 0.488379 |
Target: 5'- gUGGUGUCCuCUCUUGccauUGGUGCGuuuGAGCg -3' miRNA: 3'- -ACCGCAGG-GAGAGCc---ACCGCGU---CUCG- -5' |
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11102 | 5' | -60.7 | NC_002794.1 | + | 130445 | 0.67 | 0.737016 |
Target: 5'- aGGCGUCCgUgUUGGgcggcgaGGCGCuG-GCg -3' miRNA: 3'- aCCGCAGGgAgAGCCa------CCGCGuCuCG- -5' |
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11102 | 5' | -60.7 | NC_002794.1 | + | 131877 | 0.69 | 0.602016 |
Target: 5'- gGGCGccgcggCCUcaUCUCGGUcGCGCGcGGGCa -3' miRNA: 3'- aCCGCa-----GGG--AGAGCCAcCGCGU-CUCG- -5' |
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11102 | 5' | -60.7 | NC_002794.1 | + | 137457 | 0.66 | 0.773535 |
Target: 5'- cGGCGgaauccgCCgUgUCGGcGGCcucGUAGAGCa -3' miRNA: 3'- aCCGCa------GGgAgAGCCaCCG---CGUCUCG- -5' |
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11102 | 5' | -60.7 | NC_002794.1 | + | 141275 | 0.66 | 0.773535 |
Target: 5'- cGGgGUCCCUCgaccCGuuuagccacacGUGGCGCGccGGCg -3' miRNA: 3'- aCCgCAGGGAGa---GC-----------CACCGCGUc-UCG- -5' |
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11102 | 5' | -60.7 | NC_002794.1 | + | 141324 | 0.74 | 0.340155 |
Target: 5'- cGGCGUCgg-CUCGGUGGCGagcgaagacgAGAGCa -3' miRNA: 3'- aCCGCAGggaGAGCCACCGCg---------UCUCG- -5' |
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11102 | 5' | -60.7 | NC_002794.1 | + | 142906 | 0.72 | 0.443969 |
Target: 5'- cGGCGU-CCUC-CGGgGGC-CGGAGCa -3' miRNA: 3'- aCCGCAgGGAGaGCCaCCGcGUCUCG- -5' |
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11102 | 5' | -60.7 | NC_002794.1 | + | 143102 | 0.7 | 0.534766 |
Target: 5'- cGGCGUguuccagcCCCgCUCGGccgUGGCGCAGGu- -3' miRNA: 3'- aCCGCA--------GGGaGAGCC---ACCGCGUCUcg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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