Results 41 - 51 of 51 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
11102 | 5' | -60.7 | NC_002794.1 | + | 143279 | 0.67 | 0.737016 |
Target: 5'- cGGCGccggCCgCUCggggUCGGgcgGGUGCAGcGCg -3' miRNA: 3'- aCCGCa---GG-GAG----AGCCa--CCGCGUCuCG- -5' |
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11102 | 5' | -60.7 | NC_002794.1 | + | 145202 | 0.66 | 0.781517 |
Target: 5'- cGGCGgCCCUC-CGGcagcgcuccuucgUGGUGuCGGAGg -3' miRNA: 3'- aCCGCaGGGAGaGCC-------------ACCGC-GUCUCg -5' |
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11102 | 5' | -60.7 | NC_002794.1 | + | 145377 | 0.72 | 0.410127 |
Target: 5'- gGGCGgagacgCUCcgCUCGGUGGCGCGccGCg -3' miRNA: 3'- aCCGCa-----GGGa-GAGCCACCGCGUcuCG- -5' |
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11102 | 5' | -60.7 | NC_002794.1 | + | 149257 | 0.67 | 0.727659 |
Target: 5'- cGGCGccaccaCCCUCguccccgcCGGcGGCGCGGcGGCu -3' miRNA: 3'- aCCGCa-----GGGAGa-------GCCaCCGCGUC-UCG- -5' |
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11102 | 5' | -60.7 | NC_002794.1 | + | 156077 | 0.66 | 0.782398 |
Target: 5'- gGGCGUuggCCCa--CGGUGGCGUAGcgaacGCu -3' miRNA: 3'- aCCGCA---GGGagaGCCACCGCGUCu----CG- -5' |
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11102 | 5' | -60.7 | NC_002794.1 | + | 175560 | 0.67 | 0.725778 |
Target: 5'- uUGGCGaCCCguuggaaacccgC-CGGUGGUGUcaguGGAGCu -3' miRNA: 3'- -ACCGCaGGGa-----------GaGCCACCGCG----UCUCG- -5' |
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11102 | 5' | -60.7 | NC_002794.1 | + | 180082 | 0.66 | 0.773535 |
Target: 5'- cGGCGga-CgguaUCGGU-GCGCAGGGCu -3' miRNA: 3'- aCCGCaggGag--AGCCAcCGCGUCUCG- -5' |
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11102 | 5' | -60.7 | NC_002794.1 | + | 184641 | 0.67 | 0.708727 |
Target: 5'- cGGCGUCgCg-UCGGcGGCGUAGcaacGGCu -3' miRNA: 3'- aCCGCAGgGagAGCCaCCGCGUC----UCG- -5' |
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11102 | 5' | -60.7 | NC_002794.1 | + | 187465 | 0.66 | 0.773535 |
Target: 5'- cGGCGUCg--CUCGGcGcGCGCcGGGCc -3' miRNA: 3'- aCCGCAGggaGAGCCaC-CGCGuCUCG- -5' |
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11102 | 5' | -60.7 | NC_002794.1 | + | 189559 | 0.69 | 0.602016 |
Target: 5'- aUGGCgGUCCCgCUCGGUcGGCcgGCccGGGCc -3' miRNA: 3'- -ACCG-CAGGGaGAGCCA-CCG--CGu-CUCG- -5' |
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11102 | 5' | -60.7 | NC_002794.1 | + | 193806 | 0.67 | 0.737016 |
Target: 5'- cGGCG-CCCgCUCGucUGGCGCcGAcGCg -3' miRNA: 3'- aCCGCaGGGaGAGCc-ACCGCGuCU-CG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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