miRNA display CGI


Results 41 - 51 of 51 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11102 5' -60.7 NC_002794.1 + 143279 0.67 0.737016
Target:  5'- cGGCGccggCCgCUCggggUCGGgcgGGUGCAGcGCg -3'
miRNA:   3'- aCCGCa---GG-GAG----AGCCa--CCGCGUCuCG- -5'
11102 5' -60.7 NC_002794.1 + 145202 0.66 0.781517
Target:  5'- cGGCGgCCCUC-CGGcagcgcuccuucgUGGUGuCGGAGg -3'
miRNA:   3'- aCCGCaGGGAGaGCC-------------ACCGC-GUCUCg -5'
11102 5' -60.7 NC_002794.1 + 145377 0.72 0.410127
Target:  5'- gGGCGgagacgCUCcgCUCGGUGGCGCGccGCg -3'
miRNA:   3'- aCCGCa-----GGGa-GAGCCACCGCGUcuCG- -5'
11102 5' -60.7 NC_002794.1 + 149257 0.67 0.727659
Target:  5'- cGGCGccaccaCCCUCguccccgcCGGcGGCGCGGcGGCu -3'
miRNA:   3'- aCCGCa-----GGGAGa-------GCCaCCGCGUC-UCG- -5'
11102 5' -60.7 NC_002794.1 + 156077 0.66 0.782398
Target:  5'- gGGCGUuggCCCa--CGGUGGCGUAGcgaacGCu -3'
miRNA:   3'- aCCGCA---GGGagaGCCACCGCGUCu----CG- -5'
11102 5' -60.7 NC_002794.1 + 175560 0.67 0.725778
Target:  5'- uUGGCGaCCCguuggaaacccgC-CGGUGGUGUcaguGGAGCu -3'
miRNA:   3'- -ACCGCaGGGa-----------GaGCCACCGCG----UCUCG- -5'
11102 5' -60.7 NC_002794.1 + 180082 0.66 0.773535
Target:  5'- cGGCGga-CgguaUCGGU-GCGCAGGGCu -3'
miRNA:   3'- aCCGCaggGag--AGCCAcCGCGUCUCG- -5'
11102 5' -60.7 NC_002794.1 + 184641 0.67 0.708727
Target:  5'- cGGCGUCgCg-UCGGcGGCGUAGcaacGGCu -3'
miRNA:   3'- aCCGCAGgGagAGCCaCCGCGUC----UCG- -5'
11102 5' -60.7 NC_002794.1 + 187465 0.66 0.773535
Target:  5'- cGGCGUCg--CUCGGcGcGCGCcGGGCc -3'
miRNA:   3'- aCCGCAGggaGAGCCaC-CGCGuCUCG- -5'
11102 5' -60.7 NC_002794.1 + 189559 0.69 0.602016
Target:  5'- aUGGCgGUCCCgCUCGGUcGGCcgGCccGGGCc -3'
miRNA:   3'- -ACCG-CAGGGaGAGCCA-CCG--CGu-CUCG- -5'
11102 5' -60.7 NC_002794.1 + 193806 0.67 0.737016
Target:  5'- cGGCG-CCCgCUCGucUGGCGCcGAcGCg -3'
miRNA:   3'- aCCGCaGGGaGAGCc-ACCGCGuCU-CG- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.