miRNA display CGI


Results 21 - 40 of 51 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11102 5' -60.7 NC_002794.1 + 123771 0.68 0.670218
Target:  5'- gGGCGUggaCgCCUCcguguuggaggCGGUGGCGCcguucgGGGGCg -3'
miRNA:   3'- aCCGCA---G-GGAGa----------GCCACCGCG------UCUCG- -5'
11102 5' -60.7 NC_002794.1 + 119496 0.75 0.298532
Target:  5'- -uGCGUCCUcggggUCgUCGGcGGCGCGGAGCc -3'
miRNA:   3'- acCGCAGGG-----AG-AGCCaCCGCGUCUCG- -5'
11102 5' -60.7 NC_002794.1 + 119245 0.67 0.718226
Target:  5'- gGaGCGUgUCCUCggCGGcGGCGUAGuGCu -3'
miRNA:   3'- aC-CGCA-GGGAGa-GCCaCCGCGUCuCG- -5'
11102 5' -60.7 NC_002794.1 + 119107 0.7 0.563338
Target:  5'- gGGCGUCCagaUCGG-GGaCGCAGAagGCc -3'
miRNA:   3'- aCCGCAGGgagAGCCaCC-GCGUCU--CG- -5'
11102 5' -60.7 NC_002794.1 + 116941 0.71 0.461468
Target:  5'- cGGCGUCCCcggCGGcGGCGUcggcGGGCg -3'
miRNA:   3'- aCCGCAGGGagaGCCaCCGCGu---CUCG- -5'
11102 5' -60.7 NC_002794.1 + 115334 0.73 0.36249
Target:  5'- cGGCGUCCgggccgCUCGGcacguccaGGCGaCAGAGCg -3'
miRNA:   3'- aCCGCAGGga----GAGCCa-------CCGC-GUCUCG- -5'
11102 5' -60.7 NC_002794.1 + 113796 0.66 0.768162
Target:  5'- gGGCG-CgCUCUCGGUccucgccuucgcggcGGCGCucGGCc -3'
miRNA:   3'- aCCGCaGgGAGAGCCA---------------CCGCGucUCG- -5'
11102 5' -60.7 NC_002794.1 + 113581 0.71 0.497513
Target:  5'- cGGCGUCCUgcaCGacGGCGCGGAGUu -3'
miRNA:   3'- aCCGCAGGGagaGCcaCCGCGUCUCG- -5'
11102 5' -60.7 NC_002794.1 + 112347 0.66 0.764558
Target:  5'- cGGCGgcgCCggCggCGG-GGCGgGGAGCu -3'
miRNA:   3'- aCCGCa--GGgaGa-GCCaCCGCgUCUCG- -5'
11102 5' -60.7 NC_002794.1 + 110430 0.68 0.670218
Target:  5'- gGGCGgcugUCgUCgUCGGUGGCGgAGgccGGCg -3'
miRNA:   3'- aCCGCa---GGgAG-AGCCACCGCgUC---UCG- -5'
11102 5' -60.7 NC_002794.1 + 100459 0.73 0.385823
Target:  5'- cGGCGgcgCCUUCcCGGUGGCGgAGAa- -3'
miRNA:   3'- aCCGCa--GGGAGaGCCACCGCgUCUcg -5'
11102 5' -60.7 NC_002794.1 + 99561 0.67 0.718226
Target:  5'- cGcGCG-CCCUCcgCGGgcgaggggGGUGCGGAGg -3'
miRNA:   3'- aC-CGCaGGGAGa-GCCa-------CCGCGUCUCg -5'
11102 5' -60.7 NC_002794.1 + 96859 0.68 0.679907
Target:  5'- aGGCcaccGUCguguCCUCgacggaCGGUGGCGCuacGGGGCa -3'
miRNA:   3'- aCCG----CAG----GGAGa-----GCCACCGCG---UCUCG- -5'
11102 5' -60.7 NC_002794.1 + 94035 0.66 0.764558
Target:  5'- cGGCGggCCCgagagCggCGGcGGUGCGGGGg -3'
miRNA:   3'- aCCGCa-GGGa----Ga-GCCaCCGCGUCUCg -5'
11102 5' -60.7 NC_002794.1 + 92257 0.73 0.385823
Target:  5'- cGGCGUCgCUggCGGcGGCGCcGGGCg -3'
miRNA:   3'- aCCGCAGgGAgaGCCaCCGCGuCUCG- -5'
11102 5' -60.7 NC_002794.1 + 91037 0.72 0.410127
Target:  5'- gGGCGgCCCUCggGGUGGa-CGGGGCg -3'
miRNA:   3'- aCCGCaGGGAGagCCACCgcGUCUCG- -5'
11102 5' -60.7 NC_002794.1 + 89852 0.73 0.370158
Target:  5'- cGGcCGUCCCuuUCUCGGUuggcuuGGCGCcuGGCg -3'
miRNA:   3'- aCC-GCAGGG--AGAGCCA------CCGCGucUCG- -5'
11102 5' -60.7 NC_002794.1 + 87372 0.67 0.699169
Target:  5'- cGGCGUUCUgggCGGcgcGGC-CAGAGCg -3'
miRNA:   3'- aCCGCAGGGagaGCCa--CCGcGUCUCG- -5'
11102 5' -60.7 NC_002794.1 + 84892 0.68 0.659529
Target:  5'- gGGCuguGUgCCUCgcugcccauggguUCGGaacccGGCGCGGAGCg -3'
miRNA:   3'- aCCG---CAgGGAG-------------AGCCa----CCGCGUCUCG- -5'
11102 5' -60.7 NC_002794.1 + 84159 0.66 0.791138
Target:  5'- cGGCGcCuCCUCUCGGcccaGCGCucGGCc -3'
miRNA:   3'- aCCGCaG-GGAGAGCCac--CGCGucUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.