miRNA display CGI


Results 1 - 20 of 117 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11103 3' -61.3 NC_002794.1 + 156407 0.66 0.771829
Target:  5'- gGCGcCGCgGCCGCgGCCacGGccggCGGGUg -3'
miRNA:   3'- -CGC-GUGgCGGCGgCGGa-CCaa--GCUCA- -5'
11103 3' -61.3 NC_002794.1 + 53252 0.66 0.771829
Target:  5'- cCGCGCCGgCGUCGCCgcgcgacaacgGGgcggCGAGc -3'
miRNA:   3'- cGCGUGGCgGCGGCGGa----------CCaa--GCUCa -5'
11103 3' -61.3 NC_002794.1 + 187543 0.66 0.771829
Target:  5'- cCGCgACCGCCGCCaccGCCgccgUCGGGc -3'
miRNA:   3'- cGCG-UGGCGGCGG---CGGaccaAGCUCa -5'
11103 3' -61.3 NC_002794.1 + 71809 0.66 0.771829
Target:  5'- gGCGCGgCGagGCCGCCUcGUcgCGAGg -3'
miRNA:   3'- -CGCGUgGCggCGGCGGAcCAa-GCUCa -5'
11103 3' -61.3 NC_002794.1 + 38504 0.66 0.771829
Target:  5'- gGCGCcggUCGCCGCCGCCUccg-CGAu- -3'
miRNA:   3'- -CGCGu--GGCGGCGGCGGAccaaGCUca -5'
11103 3' -61.3 NC_002794.1 + 105744 0.66 0.771829
Target:  5'- aGCGUcgucGCCGUCGUCGCCguucaUCGGGg -3'
miRNA:   3'- -CGCG----UGGCGGCGGCGGacca-AGCUCa -5'
11103 3' -61.3 NC_002794.1 + 83951 0.66 0.762893
Target:  5'- cUGgACCGCCuggGCCGCCUGGagCGc-- -3'
miRNA:   3'- cGCgUGGCGG---CGGCGGACCaaGCuca -5'
11103 3' -61.3 NC_002794.1 + 100333 0.66 0.762893
Target:  5'- gGCGCACgGCCGgcucucgaCCGCCgagcuggaGGUggacugCGAGg -3'
miRNA:   3'- -CGCGUGgCGGC--------GGCGGa-------CCAa-----GCUCa -5'
11103 3' -61.3 NC_002794.1 + 121371 0.66 0.762893
Target:  5'- gGCGUccgaGCCgGCCGCCGCCgGGacCGcGg -3'
miRNA:   3'- -CGCG----UGG-CGGCGGCGGaCCaaGCuCa -5'
11103 3' -61.3 NC_002794.1 + 103856 0.66 0.762893
Target:  5'- aGCGgGCCGCCGCCGaCgaGaGcgaCGAGa -3'
miRNA:   3'- -CGCgUGGCGGCGGC-GgaC-Caa-GCUCa -5'
11103 3' -61.3 NC_002794.1 + 52762 0.66 0.762893
Target:  5'- cCGCGCCGCgGCCcggGCCgcgGGaUCGuGa -3'
miRNA:   3'- cGCGUGGCGgCGG---CGGa--CCaAGCuCa -5'
11103 3' -61.3 NC_002794.1 + 190667 0.66 0.762893
Target:  5'- cGCGC-CCGCCgcGCCGCCgGGUcUCc--- -3'
miRNA:   3'- -CGCGuGGCGG--CGGCGGaCCA-AGcuca -5'
11103 3' -61.3 NC_002794.1 + 68314 0.66 0.752943
Target:  5'- gGCG-GCCGacgcguuCCGCgGCCUGGUgacCGGGUu -3'
miRNA:   3'- -CGCgUGGC-------GGCGgCGGACCAa--GCUCA- -5'
11103 3' -61.3 NC_002794.1 + 151655 0.66 0.744715
Target:  5'- -gGCACUugGCuCGCCGCCgGGUgacgacCGAGg -3'
miRNA:   3'- cgCGUGG--CG-GCGGCGGaCCAa-----GCUCa -5'
11103 3' -61.3 NC_002794.1 + 114751 0.66 0.744715
Target:  5'- gGCGCcgcCCGCCGgCGCC-GGUccucggcggCGAGg -3'
miRNA:   3'- -CGCGu--GGCGGCgGCGGaCCAa--------GCUCa -5'
11103 3' -61.3 NC_002794.1 + 66843 0.66 0.744715
Target:  5'- cGgGCGCCGCCGUCGgCgcgg-CGAGg -3'
miRNA:   3'- -CgCGUGGCGGCGGCgGaccaaGCUCa -5'
11103 3' -61.3 NC_002794.1 + 112336 0.66 0.744715
Target:  5'- aGCGCGCCgGCCGgcggCGCCggcggcGGggCGGGg -3'
miRNA:   3'- -CGCGUGG-CGGCg---GCGGa-----CCaaGCUCa -5'
11103 3' -61.3 NC_002794.1 + 193885 0.66 0.744715
Target:  5'- cGCGUcgcccuccACCGCCGCCGCCUcc-UCGu-- -3'
miRNA:   3'- -CGCG--------UGGCGGCGGCGGAccaAGCuca -5'
11103 3' -61.3 NC_002794.1 + 194016 0.66 0.744715
Target:  5'- uCGCgGCCGCCGCCGCC-GGcgccUCGc-- -3'
miRNA:   3'- cGCG-UGGCGGCGGCGGaCCa---AGCuca -5'
11103 3' -61.3 NC_002794.1 + 110262 0.66 0.73549
Target:  5'- cGCGCggcgucgcgacgGCgGCCGCCGuCCUcGGgccCGAGa -3'
miRNA:   3'- -CGCG------------UGgCGGCGGC-GGA-CCaa-GCUCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.