miRNA display CGI


Results 1 - 20 of 73 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11103 5' -51.8 NC_002794.1 + 14226 0.66 0.996459
Target:  5'- cCACCCGCcgACga-CAGAGGaGACGGa -3'
miRNA:   3'- aGUGGGCG--UGaagGUCUUUcUUGCCc -5'
11103 5' -51.8 NC_002794.1 + 262 0.66 0.996459
Target:  5'- cCGCCgCGCGCg--CGGAcgcGAGGACGGcGg -3'
miRNA:   3'- aGUGG-GCGUGaagGUCU---UUCUUGCC-C- -5'
11103 5' -51.8 NC_002794.1 + 189093 0.66 0.996459
Target:  5'- aCACUCGCugUUCaGGAGcccGAaACGGGc -3'
miRNA:   3'- aGUGGGCGugAAGgUCUUu--CU-UGCCC- -5'
11103 5' -51.8 NC_002794.1 + 67904 0.66 0.995864
Target:  5'- cUCGCCCGUcucgGCUcCCGGcucuccccGAGcGACGGGg -3'
miRNA:   3'- -AGUGGGCG----UGAaGGUCu-------UUC-UUGCCC- -5'
11103 5' -51.8 NC_002794.1 + 86215 0.66 0.995864
Target:  5'- gCGCCCG-ACcggaugUUCCGGAccGAGcCGGGa -3'
miRNA:   3'- aGUGGGCgUG------AAGGUCUuuCUU-GCCC- -5'
11103 5' -51.8 NC_002794.1 + 86407 0.66 0.995864
Target:  5'- gCGCCCG-ACcggaugUUCCGGAccGAGcCGGGa -3'
miRNA:   3'- aGUGGGCgUG------AAGGUCUuuCUU-GCCC- -5'
11103 5' -51.8 NC_002794.1 + 109522 0.66 0.995864
Target:  5'- -gGCCCGCGCUcguucggcgUCGGGccGGGCGGa -3'
miRNA:   3'- agUGGGCGUGAa--------GGUCUuuCUUGCCc -5'
11103 5' -51.8 NC_002794.1 + 137564 0.66 0.995864
Target:  5'- gUCGCgCCGCcgucGCcgCCGGGGccGGAguGCGGGg -3'
miRNA:   3'- -AGUG-GGCG----UGaaGGUCUU--UCU--UGCCC- -5'
11103 5' -51.8 NC_002794.1 + 193057 0.66 0.995189
Target:  5'- gCGCCCGCACcggcUgCGGGccGucGCGGGa -3'
miRNA:   3'- aGUGGGCGUGa---AgGUCUuuCu-UGCCC- -5'
11103 5' -51.8 NC_002794.1 + 94271 0.66 0.995189
Target:  5'- gUCAUuuGCGCggCgCGGcccGAGCGGGg -3'
miRNA:   3'- -AGUGggCGUGaaG-GUCuuuCUUGCCC- -5'
11103 5' -51.8 NC_002794.1 + 103965 0.66 0.995189
Target:  5'- cCGCCgGCGCUUC-AGAcu--GCGGGc -3'
miRNA:   3'- aGUGGgCGUGAAGgUCUuucuUGCCC- -5'
11103 5' -51.8 NC_002794.1 + 44731 0.66 0.995189
Target:  5'- -gGCCgGCGCcgCCGGAGGGcuaaGACGGc -3'
miRNA:   3'- agUGGgCGUGaaGGUCUUUC----UUGCCc -5'
11103 5' -51.8 NC_002794.1 + 129819 0.66 0.995189
Target:  5'- gUCugCCGCAUcaUCgCGGAAgucgaggcGGAGCGGa -3'
miRNA:   3'- -AGugGGCGUGa-AG-GUCUU--------UCUUGCCc -5'
11103 5' -51.8 NC_002794.1 + 185346 0.66 0.995189
Target:  5'- cCGCUCGCGCgccgCCGc---GAGCGGGc -3'
miRNA:   3'- aGUGGGCGUGaa--GGUcuuuCUUGCCC- -5'
11103 5' -51.8 NC_002794.1 + 20370 0.66 0.994743
Target:  5'- cCACCUGCGCcggaUCgucgacgcggugcggCGGGAccgGGAGCGGGg -3'
miRNA:   3'- aGUGGGCGUGa---AG---------------GUCUU---UCUUGCCC- -5'
11103 5' -51.8 NC_002794.1 + 30939 0.66 0.994428
Target:  5'- gCGCCCGcCGCgccgCgAGAcAGGcACGGGa -3'
miRNA:   3'- aGUGGGC-GUGaa--GgUCUuUCU-UGCCC- -5'
11103 5' -51.8 NC_002794.1 + 67865 0.66 0.994428
Target:  5'- gUCACCCgGCGCcaUCCcGAAGcuccGAGCGGa -3'
miRNA:   3'- -AGUGGG-CGUGa-AGGuCUUU----CUUGCCc -5'
11103 5' -51.8 NC_002794.1 + 177396 0.66 0.994428
Target:  5'- cUCAauCCCGCGCguuagUCCGGAuc---CGGGu -3'
miRNA:   3'- -AGU--GGGCGUGa----AGGUCUuucuuGCCC- -5'
11103 5' -51.8 NC_002794.1 + 194 0.66 0.993571
Target:  5'- gCACacaCGCcaACggCCGGggGGAGgGGGu -3'
miRNA:   3'- aGUGg--GCG--UGaaGGUCuuUCUUgCCC- -5'
11103 5' -51.8 NC_002794.1 + 109059 0.66 0.993571
Target:  5'- -gACCUGUGCggaCCAGGAAGGG-GGGu -3'
miRNA:   3'- agUGGGCGUGaa-GGUCUUUCUUgCCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.