miRNA display CGI


Results 21 - 40 of 73 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11103 5' -51.8 NC_002794.1 + 86215 0.66 0.995864
Target:  5'- gCGCCCG-ACcggaugUUCCGGAccGAGcCGGGa -3'
miRNA:   3'- aGUGGGCgUG------AAGGUCUuuCUU-GCCC- -5'
11103 5' -51.8 NC_002794.1 + 103965 0.66 0.995189
Target:  5'- cCGCCgGCGCUUC-AGAcu--GCGGGc -3'
miRNA:   3'- aGUGGgCGUGAAGgUCUuucuUGCCC- -5'
11103 5' -51.8 NC_002794.1 + 44731 0.66 0.995189
Target:  5'- -gGCCgGCGCcgCCGGAGGGcuaaGACGGc -3'
miRNA:   3'- agUGGgCGUGaaGGUCUUUC----UUGCCc -5'
11103 5' -51.8 NC_002794.1 + 129819 0.66 0.995189
Target:  5'- gUCugCCGCAUcaUCgCGGAAgucgaggcGGAGCGGa -3'
miRNA:   3'- -AGugGGCGUGa-AG-GUCUU--------UCUUGCCc -5'
11103 5' -51.8 NC_002794.1 + 185346 0.66 0.995189
Target:  5'- cCGCUCGCGCgccgCCGc---GAGCGGGc -3'
miRNA:   3'- aGUGGGCGUGaa--GGUcuuuCUUGCCC- -5'
11103 5' -51.8 NC_002794.1 + 67904 0.66 0.995864
Target:  5'- cUCGCCCGUcucgGCUcCCGGcucuccccGAGcGACGGGg -3'
miRNA:   3'- -AGUGGGCG----UGAaGGUCu-------UUC-UUGCCC- -5'
11103 5' -51.8 NC_002794.1 + 125317 0.67 0.985996
Target:  5'- uUCGCCCGCGCcgagCCGGAgcGcgccACGGc -3'
miRNA:   3'- -AGUGGGCGUGaa--GGUCUuuCu---UGCCc -5'
11103 5' -51.8 NC_002794.1 + 186162 0.67 0.985996
Target:  5'- cUCGCCgGCcuCUUCCGuguAGAGCGGa -3'
miRNA:   3'- -AGUGGgCGu-GAAGGUcuuUCUUGCCc -5'
11103 5' -51.8 NC_002794.1 + 31715 0.67 0.98759
Target:  5'- -gACCUGCGCgggaucCCGGAuGAGAcCGGGc -3'
miRNA:   3'- agUGGGCGUGaa----GGUCU-UUCUuGCCC- -5'
11103 5' -51.8 NC_002794.1 + 51208 0.67 0.98759
Target:  5'- cUCGCCCGCggaGCggCCGGccGGccGAUGGGa -3'
miRNA:   3'- -AGUGGGCG---UGaaGGUCuuUC--UUGCCC- -5'
11103 5' -51.8 NC_002794.1 + 133928 0.67 0.98759
Target:  5'- gCGgCCGCGCccgUCCAGuu---GCGGGg -3'
miRNA:   3'- aGUgGGCGUGa--AGGUCuuucuUGCCC- -5'
11103 5' -51.8 NC_002794.1 + 128751 0.67 0.98759
Target:  5'- aCGCCCGUcgagaGCggUCCGGucAGGGcCGGGu -3'
miRNA:   3'- aGUGGGCG-----UGa-AGGUCuuUCUU-GCCC- -5'
11103 5' -51.8 NC_002794.1 + 84325 0.67 0.989041
Target:  5'- cCGCCCGagaGCcgCCucGAccGAACGGGa -3'
miRNA:   3'- aGUGGGCg--UGaaGGu-CUuuCUUGCCC- -5'
11103 5' -51.8 NC_002794.1 + 13083 0.67 0.99143
Target:  5'- -gACCgGCGCgaagUCCcGggGGAcgaggugcguucgGCGGGg -3'
miRNA:   3'- agUGGgCGUGa---AGGuCuuUCU-------------UGCCC- -5'
11103 5' -51.8 NC_002794.1 + 73020 0.67 0.990356
Target:  5'- aUCACCCGCAa--CCAGAgccucguccAAG-ACGGc -3'
miRNA:   3'- -AGUGGGCGUgaaGGUCU---------UUCuUGCCc -5'
11103 5' -51.8 NC_002794.1 + 138306 0.67 0.990356
Target:  5'- -gGCCCGCACgcugUCGGGGAGGA-GGu -3'
miRNA:   3'- agUGGGCGUGaa--GGUCUUUCUUgCCc -5'
11103 5' -51.8 NC_002794.1 + 128440 0.67 0.990356
Target:  5'- -gGCCCGCGCgcacggcgccUCCGGAGcccAGGACGa- -3'
miRNA:   3'- agUGGGCGUGa---------AGGUCUU---UCUUGCcc -5'
11103 5' -51.8 NC_002794.1 + 34833 0.68 0.984249
Target:  5'- cUCGCCgGCg---CCGGAGcgggcgucGGAGCGGGc -3'
miRNA:   3'- -AGUGGgCGugaaGGUCUU--------UCUUGCCC- -5'
11103 5' -51.8 NC_002794.1 + 86922 0.68 0.984249
Target:  5'- aCGCCCGUgGCgggCAGgcGGGGCGGGa -3'
miRNA:   3'- aGUGGGCG-UGaagGUCuuUCUUGCCC- -5'
11103 5' -51.8 NC_002794.1 + 47420 0.68 0.982341
Target:  5'- gCGCCguCGCGCggagcgCCAGGcguuucAGGACGGGg -3'
miRNA:   3'- aGUGG--GCGUGaa----GGUCUu-----UCUUGCCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.