miRNA display CGI


Results 1 - 20 of 73 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11103 5' -51.8 NC_002794.1 + 58370 0.81 0.435337
Target:  5'- cCGCCCG-ACUUCCAGGAGGcgcGCGGGc -3'
miRNA:   3'- aGUGGGCgUGAAGGUCUUUCu--UGCCC- -5'
11103 5' -51.8 NC_002794.1 + 143528 0.78 0.600998
Target:  5'- gUCGCCCGCG--UCCAGGAGGcGCGGc -3'
miRNA:   3'- -AGUGGGCGUgaAGGUCUUUCuUGCCc -5'
11103 5' -51.8 NC_002794.1 + 43106 0.77 0.67279
Target:  5'- cUC-CCCGCGCUcgUCCAGGAG--GCGGGc -3'
miRNA:   3'- -AGuGGGCGUGA--AGGUCUUUcuUGCCC- -5'
11103 5' -51.8 NC_002794.1 + 113116 0.77 0.652318
Target:  5'- gCACCUgGCGCUUCUccguguccgagAGGAAGGGCGGGc -3'
miRNA:   3'- aGUGGG-CGUGAAGG-----------UCUUUCUUGCCC- -5'
11103 5' -51.8 NC_002794.1 + 77778 0.75 0.752615
Target:  5'- gUCACCCGCACggUCCAGAucGugcagcCGGa -3'
miRNA:   3'- -AGUGGGCGUGa-AGGUCUuuCuu----GCCc -5'
11103 5' -51.8 NC_002794.1 + 52118 0.75 0.781042
Target:  5'- gCACCCGUuCUUUCuGGAAGuGCGGGu -3'
miRNA:   3'- aGUGGGCGuGAAGGuCUUUCuUGCCC- -5'
11103 5' -51.8 NC_002794.1 + 19360 0.74 0.81702
Target:  5'- cCGCCCGCcCcgcCCGGAucGGGCGGGc -3'
miRNA:   3'- aGUGGGCGuGaa-GGUCUuuCUUGCCC- -5'
11103 5' -51.8 NC_002794.1 + 96537 0.73 0.842259
Target:  5'- cUCugCCGCGCcgacgaaCCGGucgacGAGGAGCGGGa -3'
miRNA:   3'- -AGugGGCGUGaa-----GGUC-----UUUCUUGCCC- -5'
11103 5' -51.8 NC_002794.1 + 180634 0.73 0.8635
Target:  5'- cCACCCGCGC-UCCAGAcgacgagccagcgcAGGGcgugcCGGGg -3'
miRNA:   3'- aGUGGGCGUGaAGGUCU--------------UUCUu----GCCC- -5'
11103 5' -51.8 NC_002794.1 + 183065 0.72 0.873189
Target:  5'- gUCGCUCGCGCUggaCGGGaacGAGAGCGaGGu -3'
miRNA:   3'- -AGUGGGCGUGAag-GUCU---UUCUUGC-CC- -5'
11103 5' -51.8 NC_002794.1 + 145974 0.72 0.887373
Target:  5'- gCGCCCaGCGCgcCCAGAGcgcccAGAACGGc -3'
miRNA:   3'- aGUGGG-CGUGaaGGUCUU-----UCUUGCCc -5'
11103 5' -51.8 NC_002794.1 + 107209 0.72 0.906939
Target:  5'- cUCGCCCgGCGCcgCCGGgcGGcgcgcGACGGGg -3'
miRNA:   3'- -AGUGGG-CGUGaaGGUCuuUC-----UUGCCC- -5'
11103 5' -51.8 NC_002794.1 + 186678 0.72 0.880392
Target:  5'- gCGCCCGcCACgUCCAGGAucacGAcgacGCGGGc -3'
miRNA:   3'- aGUGGGC-GUGaAGGUCUUu---CU----UGCCC- -5'
11103 5' -51.8 NC_002794.1 + 191076 0.71 0.92971
Target:  5'- cUCGCCCGcCGCccggUCCAGAuacgugaacAGAcucACGGGa -3'
miRNA:   3'- -AGUGGGC-GUGa---AGGUCUu--------UCU---UGCCC- -5'
11103 5' -51.8 NC_002794.1 + 181642 0.71 0.934802
Target:  5'- -aGCCCGgGC-UCCGGGAAGAaaaccGCGGu -3'
miRNA:   3'- agUGGGCgUGaAGGUCUUUCU-----UGCCc -5'
11103 5' -51.8 NC_002794.1 + 44292 0.71 0.934802
Target:  5'- gCGCCCGC-CgggCCGGcGAG-GCGGGg -3'
miRNA:   3'- aGUGGGCGuGaa-GGUCuUUCuUGCCC- -5'
11103 5' -51.8 NC_002794.1 + 178865 0.7 0.952783
Target:  5'- cCGCCCGCcCUUCCGacucGAuAGGuacucACGGGu -3'
miRNA:   3'- aGUGGGCGuGAAGGU----CUuUCU-----UGCCC- -5'
11103 5' -51.8 NC_002794.1 + 115944 0.7 0.952783
Target:  5'- -gGCCCGcCGCgugucgCCGGGgaccguggggGGGAGCGGGa -3'
miRNA:   3'- agUGGGC-GUGaa----GGUCU----------UUCUUGCCC- -5'
11103 5' -51.8 NC_002794.1 + 182733 0.7 0.944265
Target:  5'- cUCugCCGCGgccCCAGAAAGAcGCGGu -3'
miRNA:   3'- -AGugGGCGUgaaGGUCUUUCU-UGCCc -5'
11103 5' -51.8 NC_002794.1 + 125842 0.7 0.948641
Target:  5'- gCugCUGCGCUgCCGGcuGGAcaaGCGGGc -3'
miRNA:   3'- aGugGGCGUGAaGGUCuuUCU---UGCCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.