Results 41 - 60 of 73 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
11103 | 5' | -51.8 | NC_002794.1 | + | 13083 | 0.67 | 0.99143 |
Target: 5'- -gACCgGCGCgaagUCCcGggGGAcgaggugcguucgGCGGGg -3' miRNA: 3'- agUGGgCGUGa---AGGuCuuUCU-------------UGCCC- -5' |
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11103 | 5' | -51.8 | NC_002794.1 | + | 128751 | 0.67 | 0.98759 |
Target: 5'- aCGCCCGUcgagaGCggUCCGGucAGGGcCGGGu -3' miRNA: 3'- aGUGGGCG-----UGa-AGGUCuuUCUU-GCCC- -5' |
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11103 | 5' | -51.8 | NC_002794.1 | + | 84325 | 0.67 | 0.989041 |
Target: 5'- cCGCCCGagaGCcgCCucGAccGAACGGGa -3' miRNA: 3'- aGUGGGCg--UGaaGGu-CUuuCUUGCCC- -5' |
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11103 | 5' | -51.8 | NC_002794.1 | + | 133928 | 0.67 | 0.98759 |
Target: 5'- gCGgCCGCGCccgUCCAGuu---GCGGGg -3' miRNA: 3'- aGUgGGCGUGa--AGGUCuuucuUGCCC- -5' |
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11103 | 5' | -51.8 | NC_002794.1 | + | 125317 | 0.67 | 0.985996 |
Target: 5'- uUCGCCCGCGCcgagCCGGAgcGcgccACGGc -3' miRNA: 3'- -AGUGGGCGUGaa--GGUCUuuCu---UGCCc -5' |
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11103 | 5' | -51.8 | NC_002794.1 | + | 51208 | 0.67 | 0.98759 |
Target: 5'- cUCGCCCGCggaGCggCCGGccGGccGAUGGGa -3' miRNA: 3'- -AGUGGGCG---UGaaGGUCuuUC--UUGCCC- -5' |
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11103 | 5' | -51.8 | NC_002794.1 | + | 31715 | 0.67 | 0.98759 |
Target: 5'- -gACCUGCGCgggaucCCGGAuGAGAcCGGGc -3' miRNA: 3'- agUGGGCGUGaa----GGUCU-UUCUuGCCC- -5' |
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11103 | 5' | -51.8 | NC_002794.1 | + | 94271 | 0.66 | 0.995189 |
Target: 5'- gUCAUuuGCGCggCgCGGcccGAGCGGGg -3' miRNA: 3'- -AGUGggCGUGaaG-GUCuuuCUUGCCC- -5' |
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11103 | 5' | -51.8 | NC_002794.1 | + | 103965 | 0.66 | 0.995189 |
Target: 5'- cCGCCgGCGCUUC-AGAcu--GCGGGc -3' miRNA: 3'- aGUGGgCGUGAAGgUCUuucuUGCCC- -5' |
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11103 | 5' | -51.8 | NC_002794.1 | + | 44731 | 0.66 | 0.995189 |
Target: 5'- -gGCCgGCGCcgCCGGAGGGcuaaGACGGc -3' miRNA: 3'- agUGGgCGUGaaGGUCUUUC----UUGCCc -5' |
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11103 | 5' | -51.8 | NC_002794.1 | + | 137564 | 0.66 | 0.995864 |
Target: 5'- gUCGCgCCGCcgucGCcgCCGGGGccGGAguGCGGGg -3' miRNA: 3'- -AGUG-GGCG----UGaaGGUCUU--UCU--UGCCC- -5' |
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11103 | 5' | -51.8 | NC_002794.1 | + | 86215 | 0.66 | 0.995864 |
Target: 5'- gCGCCCG-ACcggaugUUCCGGAccGAGcCGGGa -3' miRNA: 3'- aGUGGGCgUG------AAGGUCUuuCUU-GCCC- -5' |
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11103 | 5' | -51.8 | NC_002794.1 | + | 86407 | 0.66 | 0.995864 |
Target: 5'- gCGCCCG-ACcggaugUUCCGGAccGAGcCGGGa -3' miRNA: 3'- aGUGGGCgUG------AAGGUCUuuCUU-GCCC- -5' |
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11103 | 5' | -51.8 | NC_002794.1 | + | 20370 | 0.66 | 0.994743 |
Target: 5'- cCACCUGCGCcggaUCgucgacgcggugcggCGGGAccgGGAGCGGGg -3' miRNA: 3'- aGUGGGCGUGa---AG---------------GUCUU---UCUUGCCC- -5' |
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11103 | 5' | -51.8 | NC_002794.1 | + | 193057 | 0.66 | 0.995189 |
Target: 5'- gCGCCCGCACcggcUgCGGGccGucGCGGGa -3' miRNA: 3'- aGUGGGCGUGa---AgGUCUuuCu-UGCCC- -5' |
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11103 | 5' | -51.8 | NC_002794.1 | + | 154358 | 0.66 | 0.99348 |
Target: 5'- gCuCCCGCGCggUCCAGGccGcggcggcGGCGGGc -3' miRNA: 3'- aGuGGGCGUGa-AGGUCUuuC-------UUGCCC- -5' |
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11103 | 5' | -51.8 | NC_002794.1 | + | 136322 | 0.66 | 0.993571 |
Target: 5'- gCGCCCGCAgcuCUUCuCGGu---GGCGGGc -3' miRNA: 3'- aGUGGGCGU---GAAG-GUCuuucUUGCCC- -5' |
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11103 | 5' | -51.8 | NC_002794.1 | + | 109059 | 0.66 | 0.993571 |
Target: 5'- -gACCUGUGCggaCCAGGAAGGG-GGGu -3' miRNA: 3'- agUGGGCGUGaa-GGUCUUUCUUgCCC- -5' |
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11103 | 5' | -51.8 | NC_002794.1 | + | 52617 | 0.66 | 0.993571 |
Target: 5'- aCGCCCGCccgaccGCcgCCGcGucGAACGGGa -3' miRNA: 3'- aGUGGGCG------UGaaGGUcUuuCUUGCCC- -5' |
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11103 | 5' | -51.8 | NC_002794.1 | + | 48567 | 0.66 | 0.992613 |
Target: 5'- cCGCCCGUccagauggGCgagCCGGA-GGAGCGGc -3' miRNA: 3'- aGUGGGCG--------UGaa-GGUCUuUCUUGCCc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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