miRNA display CGI


Results 21 - 40 of 73 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11103 5' -51.8 NC_002794.1 + 115944 0.7 0.952783
Target:  5'- -gGCCCGcCGCgugucgCCGGGgaccguggggGGGAGCGGGa -3'
miRNA:   3'- agUGGGC-GUGaa----GGUCU----------UUCUUGCCC- -5'
11103 5' -51.8 NC_002794.1 + 19931 0.7 0.956694
Target:  5'- aCACgCGCACgcugUUCAcGGAAGAcguGCGGGc -3'
miRNA:   3'- aGUGgGCGUGa---AGGU-CUUUCU---UGCCC- -5'
11103 5' -51.8 NC_002794.1 + 3697 0.69 0.967084
Target:  5'- gUCACCCgGgGCUgagUCAGuGAGAaACGGGa -3'
miRNA:   3'- -AGUGGG-CgUGAa--GGUCuUUCU-UGCCC- -5'
11103 5' -51.8 NC_002794.1 + 127080 0.69 0.967084
Target:  5'- gCGCCCGC-CggaCCGGcuGGAGAGCGGcGg -3'
miRNA:   3'- aGUGGGCGuGaa-GGUC--UUUCUUGCC-C- -5'
11103 5' -51.8 NC_002794.1 + 73056 0.69 0.970118
Target:  5'- aUCACgCUGaACUUCUGGcaGGAGGACGGGc -3'
miRNA:   3'- -AGUG-GGCgUGAAGGUC--UUUCUUGCCC- -5'
11103 5' -51.8 NC_002794.1 + 101004 0.69 0.972945
Target:  5'- gCugCCGCGggcCUUCCugucGggGGAcGCGGGc -3'
miRNA:   3'- aGugGGCGU---GAAGGu---CuuUCU-UGCCC- -5'
11103 5' -51.8 NC_002794.1 + 86575 0.68 0.975575
Target:  5'- gCGCCCGaccggauUUUCCGGAccGAGcCGGGa -3'
miRNA:   3'- aGUGGGCgu-----GAAGGUCUuuCUU-GCCC- -5'
11103 5' -51.8 NC_002794.1 + 63229 0.68 0.975575
Target:  5'- cCGCCCcuGCGCcUCCGcGccGAACGGGa -3'
miRNA:   3'- aGUGGG--CGUGaAGGUcUuuCUUGCCC- -5'
11103 5' -51.8 NC_002794.1 + 187469 0.68 0.978012
Target:  5'- gUCGCUCgGCGCgcgCCGGGccGAGGACGaGGc -3'
miRNA:   3'- -AGUGGG-CGUGaa-GGUCU--UUCUUGC-CC- -5'
11103 5' -51.8 NC_002794.1 + 63031 0.68 0.978012
Target:  5'- cUCGCCUGCGCg--CAGGAGGAACc-- -3'
miRNA:   3'- -AGUGGGCGUGaagGUCUUUCUUGccc -5'
11103 5' -51.8 NC_002794.1 + 101581 0.68 0.980265
Target:  5'- cCGgCCGcCGCggCCGGggGG-GCGGGu -3'
miRNA:   3'- aGUgGGC-GUGaaGGUCuuUCuUGCCC- -5'
11103 5' -51.8 NC_002794.1 + 76008 0.68 0.981532
Target:  5'- uUCACCgGCACUUCUucgacacGCGGGc -3'
miRNA:   3'- -AGUGGgCGUGAAGGucuuucuUGCCC- -5'
11103 5' -51.8 NC_002794.1 + 47420 0.68 0.982341
Target:  5'- gCGCCguCGCGCggagcgCCAGGcguuucAGGACGGGg -3'
miRNA:   3'- aGUGG--GCGUGaa----GGUCUu-----UCUUGCCC- -5'
11103 5' -51.8 NC_002794.1 + 67458 0.68 0.982341
Target:  5'- cCGCCCGCACUcgCCGaccagcgcgcGAcuGGACaGGGa -3'
miRNA:   3'- aGUGGGCGUGAa-GGU----------CUuuCUUG-CCC- -5'
11103 5' -51.8 NC_002794.1 + 86922 0.68 0.984249
Target:  5'- aCGCCCGUgGCgggCAGgcGGGGCGGGa -3'
miRNA:   3'- aGUGGGCG-UGaagGUCuuUCUUGCCC- -5'
11103 5' -51.8 NC_002794.1 + 34833 0.68 0.984249
Target:  5'- cUCGCCgGCg---CCGGAGcgggcgucGGAGCGGGc -3'
miRNA:   3'- -AGUGGgCGugaaGGUCUU--------UCUUGCCC- -5'
11103 5' -51.8 NC_002794.1 + 125317 0.67 0.985996
Target:  5'- uUCGCCCGCGCcgagCCGGAgcGcgccACGGc -3'
miRNA:   3'- -AGUGGGCGUGaa--GGUCUuuCu---UGCCc -5'
11103 5' -51.8 NC_002794.1 + 186162 0.67 0.985996
Target:  5'- cUCGCCgGCcuCUUCCGuguAGAGCGGa -3'
miRNA:   3'- -AGUGGgCGu-GAAGGUcuuUCUUGCCc -5'
11103 5' -51.8 NC_002794.1 + 31715 0.67 0.98759
Target:  5'- -gACCUGCGCgggaucCCGGAuGAGAcCGGGc -3'
miRNA:   3'- agUGGGCGUGaa----GGUCU-UUCUuGCCC- -5'
11103 5' -51.8 NC_002794.1 + 51208 0.67 0.98759
Target:  5'- cUCGCCCGCggaGCggCCGGccGGccGAUGGGa -3'
miRNA:   3'- -AGUGGGCG---UGaaGGUCuuUC--UUGCCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.