Results 41 - 60 of 73 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
11103 | 5' | -51.8 | NC_002794.1 | + | 31715 | 0.67 | 0.98759 |
Target: 5'- -gACCUGCGCgggaucCCGGAuGAGAcCGGGc -3' miRNA: 3'- agUGGGCGUGaa----GGUCU-UUCUuGCCC- -5' |
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11103 | 5' | -51.8 | NC_002794.1 | + | 51208 | 0.67 | 0.98759 |
Target: 5'- cUCGCCCGCggaGCggCCGGccGGccGAUGGGa -3' miRNA: 3'- -AGUGGGCG---UGaaGGUCuuUC--UUGCCC- -5' |
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11103 | 5' | -51.8 | NC_002794.1 | + | 84325 | 0.67 | 0.989041 |
Target: 5'- cCGCCCGagaGCcgCCucGAccGAACGGGa -3' miRNA: 3'- aGUGGGCg--UGaaGGu-CUuuCUUGCCC- -5' |
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11103 | 5' | -51.8 | NC_002794.1 | + | 128440 | 0.67 | 0.990356 |
Target: 5'- -gGCCCGCGCgcacggcgccUCCGGAGcccAGGACGa- -3' miRNA: 3'- agUGGGCGUGa---------AGGUCUU---UCUUGCcc -5' |
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11103 | 5' | -51.8 | NC_002794.1 | + | 138306 | 0.67 | 0.990356 |
Target: 5'- -gGCCCGCACgcugUCGGGGAGGA-GGu -3' miRNA: 3'- agUGGGCGUGaa--GGUCUUUCUUgCCc -5' |
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11103 | 5' | -51.8 | NC_002794.1 | + | 73020 | 0.67 | 0.990356 |
Target: 5'- aUCACCCGCAa--CCAGAgccucguccAAG-ACGGc -3' miRNA: 3'- -AGUGGGCGUgaaGGUCU---------UUCuUGCCc -5' |
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11103 | 5' | -51.8 | NC_002794.1 | + | 13083 | 0.67 | 0.99143 |
Target: 5'- -gACCgGCGCgaagUCCcGggGGAcgaggugcguucgGCGGGg -3' miRNA: 3'- agUGGgCGUGa---AGGuCuuUCU-------------UGCCC- -5' |
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11103 | 5' | -51.8 | NC_002794.1 | + | 48567 | 0.66 | 0.992613 |
Target: 5'- cCGCCCGUccagauggGCgagCCGGA-GGAGCGGc -3' miRNA: 3'- aGUGGGCG--------UGaa-GGUCUuUCUUGCCc -5' |
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11103 | 5' | -51.8 | NC_002794.1 | + | 154358 | 0.66 | 0.99348 |
Target: 5'- gCuCCCGCGCggUCCAGGccGcggcggcGGCGGGc -3' miRNA: 3'- aGuGGGCGUGa-AGGUCUuuC-------UUGCCC- -5' |
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11103 | 5' | -51.8 | NC_002794.1 | + | 152903 | 0.66 | 0.993571 |
Target: 5'- -gACCCuGCACgccaucgUCCGGAucGAGgccCGGGc -3' miRNA: 3'- agUGGG-CGUGa------AGGUCUuuCUU---GCCC- -5' |
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11103 | 5' | -51.8 | NC_002794.1 | + | 41689 | 0.66 | 0.993571 |
Target: 5'- gCGCCCGgACcgCCGGAucGuccCGGGc -3' miRNA: 3'- aGUGGGCgUGaaGGUCUuuCuu-GCCC- -5' |
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11103 | 5' | -51.8 | NC_002794.1 | + | 136322 | 0.66 | 0.993571 |
Target: 5'- gCGCCCGCAgcuCUUCuCGGu---GGCGGGc -3' miRNA: 3'- aGUGGGCGU---GAAG-GUCuuucUUGCCC- -5' |
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11103 | 5' | -51.8 | NC_002794.1 | + | 52617 | 0.66 | 0.993571 |
Target: 5'- aCGCCCGCccgaccGCcgCCGcGucGAACGGGa -3' miRNA: 3'- aGUGGGCG------UGaaGGUcUuuCUUGCCC- -5' |
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11103 | 5' | -51.8 | NC_002794.1 | + | 109059 | 0.66 | 0.993571 |
Target: 5'- -gACCUGUGCggaCCAGGAAGGG-GGGu -3' miRNA: 3'- agUGGGCGUGaa-GGUCUUUCUUgCCC- -5' |
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11103 | 5' | -51.8 | NC_002794.1 | + | 194 | 0.66 | 0.993571 |
Target: 5'- gCACacaCGCcaACggCCGGggGGAGgGGGu -3' miRNA: 3'- aGUGg--GCG--UGaaGGUCuuUCUUgCCC- -5' |
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11103 | 5' | -51.8 | NC_002794.1 | + | 30939 | 0.66 | 0.994428 |
Target: 5'- gCGCCCGcCGCgccgCgAGAcAGGcACGGGa -3' miRNA: 3'- aGUGGGC-GUGaa--GgUCUuUCU-UGCCC- -5' |
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11103 | 5' | -51.8 | NC_002794.1 | + | 67865 | 0.66 | 0.994428 |
Target: 5'- gUCACCCgGCGCcaUCCcGAAGcuccGAGCGGa -3' miRNA: 3'- -AGUGGG-CGUGa-AGGuCUUU----CUUGCCc -5' |
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11103 | 5' | -51.8 | NC_002794.1 | + | 177396 | 0.66 | 0.994428 |
Target: 5'- cUCAauCCCGCGCguuagUCCGGAuc---CGGGu -3' miRNA: 3'- -AGU--GGGCGUGa----AGGUCUuucuuGCCC- -5' |
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11103 | 5' | -51.8 | NC_002794.1 | + | 20370 | 0.66 | 0.994743 |
Target: 5'- cCACCUGCGCcggaUCgucgacgcggugcggCGGGAccgGGAGCGGGg -3' miRNA: 3'- aGUGGGCGUGa---AG---------------GUCUU---UCUUGCCC- -5' |
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11103 | 5' | -51.8 | NC_002794.1 | + | 193057 | 0.66 | 0.995189 |
Target: 5'- gCGCCCGCACcggcUgCGGGccGucGCGGGa -3' miRNA: 3'- aGUGGGCGUGa---AgGUCUuuCu-UGCCC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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