miRNA display CGI


Results 21 - 40 of 73 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11103 5' -51.8 NC_002794.1 + 58370 0.81 0.435337
Target:  5'- cCGCCCG-ACUUCCAGGAGGcgcGCGGGc -3'
miRNA:   3'- aGUGGGCgUGAAGGUCUUUCu--UGCCC- -5'
11103 5' -51.8 NC_002794.1 + 63031 0.68 0.978012
Target:  5'- cUCGCCUGCGCg--CAGGAGGAACc-- -3'
miRNA:   3'- -AGUGGGCGUGaagGUCUUUCUUGccc -5'
11103 5' -51.8 NC_002794.1 + 63229 0.68 0.975575
Target:  5'- cCGCCCcuGCGCcUCCGcGccGAACGGGa -3'
miRNA:   3'- aGUGGG--CGUGaAGGUcUuuCUUGCCC- -5'
11103 5' -51.8 NC_002794.1 + 67458 0.68 0.982341
Target:  5'- cCGCCCGCACUcgCCGaccagcgcgcGAcuGGACaGGGa -3'
miRNA:   3'- aGUGGGCGUGAa-GGU----------CUuuCUUG-CCC- -5'
11103 5' -51.8 NC_002794.1 + 67865 0.66 0.994428
Target:  5'- gUCACCCgGCGCcaUCCcGAAGcuccGAGCGGa -3'
miRNA:   3'- -AGUGGG-CGUGa-AGGuCUUU----CUUGCCc -5'
11103 5' -51.8 NC_002794.1 + 67904 0.66 0.995864
Target:  5'- cUCGCCCGUcucgGCUcCCGGcucuccccGAGcGACGGGg -3'
miRNA:   3'- -AGUGGGCG----UGAaGGUCu-------UUC-UUGCCC- -5'
11103 5' -51.8 NC_002794.1 + 73020 0.67 0.990356
Target:  5'- aUCACCCGCAa--CCAGAgccucguccAAG-ACGGc -3'
miRNA:   3'- -AGUGGGCGUgaaGGUCU---------UUCuUGCCc -5'
11103 5' -51.8 NC_002794.1 + 73056 0.69 0.970118
Target:  5'- aUCACgCUGaACUUCUGGcaGGAGGACGGGc -3'
miRNA:   3'- -AGUG-GGCgUGAAGGUC--UUUCUUGCCC- -5'
11103 5' -51.8 NC_002794.1 + 76008 0.68 0.981532
Target:  5'- uUCACCgGCACUUCUucgacacGCGGGc -3'
miRNA:   3'- -AGUGGgCGUGAAGGucuuucuUGCCC- -5'
11103 5' -51.8 NC_002794.1 + 77778 0.75 0.752615
Target:  5'- gUCACCCGCACggUCCAGAucGugcagcCGGa -3'
miRNA:   3'- -AGUGGGCGUGa-AGGUCUuuCuu----GCCc -5'
11103 5' -51.8 NC_002794.1 + 84325 0.67 0.989041
Target:  5'- cCGCCCGagaGCcgCCucGAccGAACGGGa -3'
miRNA:   3'- aGUGGGCg--UGaaGGu-CUuuCUUGCCC- -5'
11103 5' -51.8 NC_002794.1 + 86215 0.66 0.995864
Target:  5'- gCGCCCG-ACcggaugUUCCGGAccGAGcCGGGa -3'
miRNA:   3'- aGUGGGCgUG------AAGGUCUuuCUU-GCCC- -5'
11103 5' -51.8 NC_002794.1 + 86407 0.66 0.995864
Target:  5'- gCGCCCG-ACcggaugUUCCGGAccGAGcCGGGa -3'
miRNA:   3'- aGUGGGCgUG------AAGGUCUuuCUU-GCCC- -5'
11103 5' -51.8 NC_002794.1 + 86575 0.68 0.975575
Target:  5'- gCGCCCGaccggauUUUCCGGAccGAGcCGGGa -3'
miRNA:   3'- aGUGGGCgu-----GAAGGUCUuuCUU-GCCC- -5'
11103 5' -51.8 NC_002794.1 + 86922 0.68 0.984249
Target:  5'- aCGCCCGUgGCgggCAGgcGGGGCGGGa -3'
miRNA:   3'- aGUGGGCG-UGaagGUCuuUCUUGCCC- -5'
11103 5' -51.8 NC_002794.1 + 94271 0.66 0.995189
Target:  5'- gUCAUuuGCGCggCgCGGcccGAGCGGGg -3'
miRNA:   3'- -AGUGggCGUGaaG-GUCuuuCUUGCCC- -5'
11103 5' -51.8 NC_002794.1 + 96537 0.73 0.842259
Target:  5'- cUCugCCGCGCcgacgaaCCGGucgacGAGGAGCGGGa -3'
miRNA:   3'- -AGugGGCGUGaa-----GGUC-----UUUCUUGCCC- -5'
11103 5' -51.8 NC_002794.1 + 101004 0.69 0.972945
Target:  5'- gCugCCGCGggcCUUCCugucGggGGAcGCGGGc -3'
miRNA:   3'- aGugGGCGU---GAAGGu---CuuUCU-UGCCC- -5'
11103 5' -51.8 NC_002794.1 + 101581 0.68 0.980265
Target:  5'- cCGgCCGcCGCggCCGGggGG-GCGGGu -3'
miRNA:   3'- aGUgGGC-GUGaaGGUCuuUCuUGCCC- -5'
11103 5' -51.8 NC_002794.1 + 103965 0.66 0.995189
Target:  5'- cCGCCgGCGCUUC-AGAcu--GCGGGc -3'
miRNA:   3'- aGUGGgCGUGAAGgUCUuucuUGCCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.