miRNA display CGI


Results 41 - 60 of 73 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11103 5' -51.8 NC_002794.1 + 107209 0.72 0.906939
Target:  5'- cUCGCCCgGCGCcgCCGGgcGGcgcgcGACGGGg -3'
miRNA:   3'- -AGUGGG-CGUGaaGGUCuuUC-----UUGCCC- -5'
11103 5' -51.8 NC_002794.1 + 109059 0.66 0.993571
Target:  5'- -gACCUGUGCggaCCAGGAAGGG-GGGu -3'
miRNA:   3'- agUGGGCGUGaa-GGUCUUUCUUgCCC- -5'
11103 5' -51.8 NC_002794.1 + 109522 0.66 0.995864
Target:  5'- -gGCCCGCGCUcguucggcgUCGGGccGGGCGGa -3'
miRNA:   3'- agUGGGCGUGAa--------GGUCUuuCUUGCCc -5'
11103 5' -51.8 NC_002794.1 + 113116 0.77 0.652318
Target:  5'- gCACCUgGCGCUUCUccguguccgagAGGAAGGGCGGGc -3'
miRNA:   3'- aGUGGG-CGUGAAGG-----------UCUUUCUUGCCC- -5'
11103 5' -51.8 NC_002794.1 + 115944 0.7 0.952783
Target:  5'- -gGCCCGcCGCgugucgCCGGGgaccguggggGGGAGCGGGa -3'
miRNA:   3'- agUGGGC-GUGaa----GGUCU----------UUCUUGCCC- -5'
11103 5' -51.8 NC_002794.1 + 125317 0.67 0.985996
Target:  5'- uUCGCCCGCGCcgagCCGGAgcGcgccACGGc -3'
miRNA:   3'- -AGUGGGCGUGaa--GGUCUuuCu---UGCCc -5'
11103 5' -51.8 NC_002794.1 + 125842 0.7 0.948641
Target:  5'- gCugCUGCGCUgCCGGcuGGAcaaGCGGGc -3'
miRNA:   3'- aGugGGCGUGAaGGUCuuUCU---UGCCC- -5'
11103 5' -51.8 NC_002794.1 + 126645 0.7 0.944265
Target:  5'- gCGCCCGgACgcgCC-GAGAGAccgACGGGc -3'
miRNA:   3'- aGUGGGCgUGaa-GGuCUUUCU---UGCCC- -5'
11103 5' -51.8 NC_002794.1 + 127080 0.69 0.967084
Target:  5'- gCGCCCGC-CggaCCGGcuGGAGAGCGGcGg -3'
miRNA:   3'- aGUGGGCGuGaa-GGUC--UUUCUUGCC-C- -5'
11103 5' -51.8 NC_002794.1 + 128440 0.67 0.990356
Target:  5'- -gGCCCGCGCgcacggcgccUCCGGAGcccAGGACGa- -3'
miRNA:   3'- agUGGGCGUGa---------AGGUCUU---UCUUGCcc -5'
11103 5' -51.8 NC_002794.1 + 128751 0.67 0.98759
Target:  5'- aCGCCCGUcgagaGCggUCCGGucAGGGcCGGGu -3'
miRNA:   3'- aGUGGGCG-----UGa-AGGUCuuUCUU-GCCC- -5'
11103 5' -51.8 NC_002794.1 + 129819 0.66 0.995189
Target:  5'- gUCugCCGCAUcaUCgCGGAAgucgaggcGGAGCGGa -3'
miRNA:   3'- -AGugGGCGUGa-AG-GUCUU--------UCUUGCCc -5'
11103 5' -51.8 NC_002794.1 + 133928 0.67 0.98759
Target:  5'- gCGgCCGCGCccgUCCAGuu---GCGGGg -3'
miRNA:   3'- aGUgGGCGUGa--AGGUCuuucuUGCCC- -5'
11103 5' -51.8 NC_002794.1 + 136322 0.66 0.993571
Target:  5'- gCGCCCGCAgcuCUUCuCGGu---GGCGGGc -3'
miRNA:   3'- aGUGGGCGU---GAAG-GUCuuucUUGCCC- -5'
11103 5' -51.8 NC_002794.1 + 137564 0.66 0.995864
Target:  5'- gUCGCgCCGCcgucGCcgCCGGGGccGGAguGCGGGg -3'
miRNA:   3'- -AGUG-GGCG----UGaaGGUCUU--UCU--UGCCC- -5'
11103 5' -51.8 NC_002794.1 + 138306 0.67 0.990356
Target:  5'- -gGCCCGCACgcugUCGGGGAGGA-GGu -3'
miRNA:   3'- agUGGGCGUGaa--GGUCUUUCUUgCCc -5'
11103 5' -51.8 NC_002794.1 + 143528 0.78 0.600998
Target:  5'- gUCGCCCGCG--UCCAGGAGGcGCGGc -3'
miRNA:   3'- -AGUGGGCGUgaAGGUCUUUCuUGCCc -5'
11103 5' -51.8 NC_002794.1 + 145974 0.72 0.887373
Target:  5'- gCGCCCaGCGCgcCCAGAGcgcccAGAACGGc -3'
miRNA:   3'- aGUGGG-CGUGaaGGUCUU-----UCUUGCCc -5'
11103 5' -51.8 NC_002794.1 + 152903 0.66 0.993571
Target:  5'- -gACCCuGCACgccaucgUCCGGAucGAGgccCGGGc -3'
miRNA:   3'- agUGGG-CGUGa------AGGUCUuuCUU---GCCC- -5'
11103 5' -51.8 NC_002794.1 + 154358 0.66 0.99348
Target:  5'- gCuCCCGCGCggUCCAGGccGcggcggcGGCGGGc -3'
miRNA:   3'- aGuGGGCGUGa-AGGUCUuuC-------UUGCCC- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.