miRNA display CGI


Results 21 - 40 of 73 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11103 5' -51.8 NC_002794.1 + 133928 0.67 0.98759
Target:  5'- gCGgCCGCGCccgUCCAGuu---GCGGGg -3'
miRNA:   3'- aGUgGGCGUGa--AGGUCuuucuUGCCC- -5'
11103 5' -51.8 NC_002794.1 + 129819 0.66 0.995189
Target:  5'- gUCugCCGCAUcaUCgCGGAAgucgaggcGGAGCGGa -3'
miRNA:   3'- -AGugGGCGUGa-AG-GUCUU--------UCUUGCCc -5'
11103 5' -51.8 NC_002794.1 + 128751 0.67 0.98759
Target:  5'- aCGCCCGUcgagaGCggUCCGGucAGGGcCGGGu -3'
miRNA:   3'- aGUGGGCG-----UGa-AGGUCuuUCUU-GCCC- -5'
11103 5' -51.8 NC_002794.1 + 128440 0.67 0.990356
Target:  5'- -gGCCCGCGCgcacggcgccUCCGGAGcccAGGACGa- -3'
miRNA:   3'- agUGGGCGUGa---------AGGUCUU---UCUUGCcc -5'
11103 5' -51.8 NC_002794.1 + 127080 0.69 0.967084
Target:  5'- gCGCCCGC-CggaCCGGcuGGAGAGCGGcGg -3'
miRNA:   3'- aGUGGGCGuGaa-GGUC--UUUCUUGCC-C- -5'
11103 5' -51.8 NC_002794.1 + 126645 0.7 0.944265
Target:  5'- gCGCCCGgACgcgCC-GAGAGAccgACGGGc -3'
miRNA:   3'- aGUGGGCgUGaa-GGuCUUUCU---UGCCC- -5'
11103 5' -51.8 NC_002794.1 + 125842 0.7 0.948641
Target:  5'- gCugCUGCGCUgCCGGcuGGAcaaGCGGGc -3'
miRNA:   3'- aGugGGCGUGAaGGUCuuUCU---UGCCC- -5'
11103 5' -51.8 NC_002794.1 + 125317 0.67 0.985996
Target:  5'- uUCGCCCGCGCcgagCCGGAgcGcgccACGGc -3'
miRNA:   3'- -AGUGGGCGUGaa--GGUCUuuCu---UGCCc -5'
11103 5' -51.8 NC_002794.1 + 115944 0.7 0.952783
Target:  5'- -gGCCCGcCGCgugucgCCGGGgaccguggggGGGAGCGGGa -3'
miRNA:   3'- agUGGGC-GUGaa----GGUCU----------UUCUUGCCC- -5'
11103 5' -51.8 NC_002794.1 + 113116 0.77 0.652318
Target:  5'- gCACCUgGCGCUUCUccguguccgagAGGAAGGGCGGGc -3'
miRNA:   3'- aGUGGG-CGUGAAGG-----------UCUUUCUUGCCC- -5'
11103 5' -51.8 NC_002794.1 + 109522 0.66 0.995864
Target:  5'- -gGCCCGCGCUcguucggcgUCGGGccGGGCGGa -3'
miRNA:   3'- agUGGGCGUGAa--------GGUCUuuCUUGCCc -5'
11103 5' -51.8 NC_002794.1 + 109059 0.66 0.993571
Target:  5'- -gACCUGUGCggaCCAGGAAGGG-GGGu -3'
miRNA:   3'- agUGGGCGUGaa-GGUCUUUCUUgCCC- -5'
11103 5' -51.8 NC_002794.1 + 107209 0.72 0.906939
Target:  5'- cUCGCCCgGCGCcgCCGGgcGGcgcgcGACGGGg -3'
miRNA:   3'- -AGUGGG-CGUGaaGGUCuuUC-----UUGCCC- -5'
11103 5' -51.8 NC_002794.1 + 103965 0.66 0.995189
Target:  5'- cCGCCgGCGCUUC-AGAcu--GCGGGc -3'
miRNA:   3'- aGUGGgCGUGAAGgUCUuucuUGCCC- -5'
11103 5' -51.8 NC_002794.1 + 101581 0.68 0.980265
Target:  5'- cCGgCCGcCGCggCCGGggGG-GCGGGu -3'
miRNA:   3'- aGUgGGC-GUGaaGGUCuuUCuUGCCC- -5'
11103 5' -51.8 NC_002794.1 + 101004 0.69 0.972945
Target:  5'- gCugCCGCGggcCUUCCugucGggGGAcGCGGGc -3'
miRNA:   3'- aGugGGCGU---GAAGGu---CuuUCU-UGCCC- -5'
11103 5' -51.8 NC_002794.1 + 96537 0.73 0.842259
Target:  5'- cUCugCCGCGCcgacgaaCCGGucgacGAGGAGCGGGa -3'
miRNA:   3'- -AGugGGCGUGaa-----GGUC-----UUUCUUGCCC- -5'
11103 5' -51.8 NC_002794.1 + 94271 0.66 0.995189
Target:  5'- gUCAUuuGCGCggCgCGGcccGAGCGGGg -3'
miRNA:   3'- -AGUGggCGUGaaG-GUCuuuCUUGCCC- -5'
11103 5' -51.8 NC_002794.1 + 86922 0.68 0.984249
Target:  5'- aCGCCCGUgGCgggCAGgcGGGGCGGGa -3'
miRNA:   3'- aGUGGGCG-UGaagGUCuuUCUUGCCC- -5'
11103 5' -51.8 NC_002794.1 + 86575 0.68 0.975575
Target:  5'- gCGCCCGaccggauUUUCCGGAccGAGcCGGGa -3'
miRNA:   3'- aGUGGGCgu-----GAAGGUCUuuCUU-GCCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.