miRNA display CGI


Results 61 - 73 of 73 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11103 5' -51.8 NC_002794.1 + 84325 0.67 0.989041
Target:  5'- cCGCCCGagaGCcgCCucGAccGAACGGGa -3'
miRNA:   3'- aGUGGGCg--UGaaGGu-CUuuCUUGCCC- -5'
11103 5' -51.8 NC_002794.1 + 13083 0.67 0.99143
Target:  5'- -gACCgGCGCgaagUCCcGggGGAcgaggugcguucgGCGGGg -3'
miRNA:   3'- agUGGgCGUGa---AGGuCuuUCU-------------UGCCC- -5'
11103 5' -51.8 NC_002794.1 + 73020 0.67 0.990356
Target:  5'- aUCACCCGCAa--CCAGAgccucguccAAG-ACGGc -3'
miRNA:   3'- -AGUGGGCGUgaaGGUCU---------UUCuUGCCc -5'
11103 5' -51.8 NC_002794.1 + 138306 0.67 0.990356
Target:  5'- -gGCCCGCACgcugUCGGGGAGGA-GGu -3'
miRNA:   3'- agUGGGCGUGaa--GGUCUUUCUUgCCc -5'
11103 5' -51.8 NC_002794.1 + 128440 0.67 0.990356
Target:  5'- -gGCCCGCGCgcacggcgccUCCGGAGcccAGGACGa- -3'
miRNA:   3'- agUGGGCGUGa---------AGGUCUU---UCUUGCcc -5'
11103 5' -51.8 NC_002794.1 + 136322 0.66 0.993571
Target:  5'- gCGCCCGCAgcuCUUCuCGGu---GGCGGGc -3'
miRNA:   3'- aGUGGGCGU---GAAG-GUCuuucUUGCCC- -5'
11103 5' -51.8 NC_002794.1 + 154358 0.66 0.99348
Target:  5'- gCuCCCGCGCggUCCAGGccGcggcggcGGCGGGc -3'
miRNA:   3'- aGuGGGCGUGa-AGGUCUuuC-------UUGCCC- -5'
11103 5' -51.8 NC_002794.1 + 48567 0.66 0.992613
Target:  5'- cCGCCCGUccagauggGCgagCCGGA-GGAGCGGc -3'
miRNA:   3'- aGUGGGCG--------UGaa-GGUCUuUCUUGCCc -5'
11103 5' -51.8 NC_002794.1 + 41689 0.66 0.993571
Target:  5'- gCGCCCGgACcgCCGGAucGuccCGGGc -3'
miRNA:   3'- aGUGGGCgUGaaGGUCUuuCuu-GCCC- -5'
11103 5' -51.8 NC_002794.1 + 52617 0.66 0.993571
Target:  5'- aCGCCCGCccgaccGCcgCCGcGucGAACGGGa -3'
miRNA:   3'- aGUGGGCG------UGaaGGUcUuuCUUGCCC- -5'
11103 5' -51.8 NC_002794.1 + 109059 0.66 0.993571
Target:  5'- -gACCUGUGCggaCCAGGAAGGG-GGGu -3'
miRNA:   3'- agUGGGCGUGaa-GGUCUUUCUUgCCC- -5'
11103 5' -51.8 NC_002794.1 + 194 0.66 0.993571
Target:  5'- gCACacaCGCcaACggCCGGggGGAGgGGGu -3'
miRNA:   3'- aGUGg--GCG--UGaaGGUCuuUCUUgCCC- -5'
11103 5' -51.8 NC_002794.1 + 14226 0.66 0.996459
Target:  5'- cCACCCGCcgACga-CAGAGGaGACGGa -3'
miRNA:   3'- aGUGGGCG--UGaagGUCUUUcUUGCCc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.